RNA id: TU33227


Basic Information

Item Value
RNA id TU33227
length 2349
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00007817
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31192010 ~ 31246649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGCGCAGCGCCGCAGCTCGAGACTTCACGCACCGATACACGCGCAGCCCCTCGCCATCCCGCACGCTGAGCCACGCAAGAGGGGCGGCTTTCACAAACCAGCATCTATCAACCGCGCATTTGCGTCACAAATTCAAACCAAAACCTTCAAAGCAATTACCGTGAAGATCAACCAGTTTCTGGTGTATAGAGTTATTGCCGGACTGCTGTCAATAAAGCATGGTCAGCAGCATAGTCCCAATAGTCTGCAATACAATTCAAACAGCACCGCAAGGCTTGGGGTTCAGTATCCGTCAGCAGCCGGGCAGCACGTCACCGCACACACGGAGCTCGTCGACCTCAGAAGACAAGAGGTGAAACTAGACAGTGACAACTCAAGCTTTGAGAGGCTTCTCAAGTCACAGACACTGACTGCTCTGCAGGACGACTACCCTCCCAACAAAACAGAGTTTGTGGTCAGCACAGCTGTGGTAATTACGGACAAGTGGGTTCgttcaaaaacaaatgctacaaGAAGAGATAAGACGGAAACATGGCAGCAATTATCAGGACTTGAACATTTTTACAGCTATAAATATATCTCCTGCAGCACTTCGCAAAGTTGCTCTGGATCCAGCTGAAAGGAAAGAGCCTGTATCAGCAACAGAAGATTCCCCGTTTACGTGGACAGCCAACTGTGCACTACAGTTAGCGAGGGCTGGCCTCAATTCTTTTAGTTAATGGGGAGCGGAAGAAgaatgaaggggaaaaaatgtagTGTTCCTGCCATTTTCACTTGAACAGTAATGATGTAATTTATGCTAATAACATGCAAAGTCTATGCTGGTATATCAAATGTAATGTGTTCCAGTTTTTAAGACTACACAAATTATTGCCCTTGCTCAATGGCCTTACAGTTTAAATGACTACAGTCACAGACCTACACCAAACACAAGACACGTGTCAAGGCTCTAATGTTTTAAGTAAATGCTGGGCCTGAAGATCAGCGGGTACATTGAGGTCTCTGTGATCGGATCACAGCAACCCATGTTTCTAATCATTGAATACTGAAGAGCAGAACTTTTCCTAAAGTCACGAATAAGATGCTTAAATGATTATAAAATTTCACATCAAGAGCACAGTTCCATAAATGCTTCTAAAAAATATCAAACCTCACAGCTTGAACTTAATTTGCCATCTGTACTGTTAGGCGCATGCAACTGAATTGCAATGTTCTACCAaaccacataaaaaaaagtacaagttTCTTTGTTGGACTGCTTCGCCCACCTATCTCCTCGGTGATGTTAGCTCTTGAAATAAAATTCCCTCAAGAACATTTGCACTTCATGGACTGTTAGGTagaattaaatcataaaaaccATTGGGTGGAGAAAGCAAAGGGAGATTTCTCAAAATAGCCTTAAAAAGAGCCATAAACCTTGAATGACAGTCACAGAGCTTCCAGATCAGATATATACACAGCATAATGTGCAGCAAATCCCTGGGTTCTGGCTAGACTGTCCACCATCCTGCTTAAAATAGCACCACTTGCAGGCTTGTATAAGAGCTAAATAATAGATATCTTAATGACATAGCATATCTTACGTCAACagaaaggttcagttcctcagctTTGAAAACCATAAAGCAATTAATTCTGTTGATTTGGCTGCAGATGAAGAACATCAAATGGTAACAAGCACTTTGGGTTGTCGACCAGCATGGCAAACAATCTGACGTGGACCAAGGCAATCCTGTCAGTTCCCATGGCTAGCTTTAACTACAGAGTGGAGTACAGCAGGATTCATTTATTAGGGTTTTgtcagcagaagaaaaaaaatcaggtcTTCAAAACCAGTTTTTCTTTGGACTAGCACACAAATTAATCTGCCTTAAGGTTTACAAGTGCGATCCTGCTTCCCCTTTCATTTCTATTGGAATGCAAATTAATCTTGTCTTACAAGCGGGCTGCAGTGAATTGGGCGAATCCAAACGCTGGGAACACTGACAGTTTGAACAAGGTTGTGCTCCCAAAGGGGTCTGCAATTTTCTTTGAAAGAACAGGGAGATATACCTCCCTTGTGGGAGGGAATGCCCAAATGAAGTTGTCCTACAGTTACCATGGACTGGTTGAcgtaaaatcagaaaaaattATCCCTTTGAATGCATTTGGAGTGCAGTCTGCAGTCTGAATTGTCCTGtcgattttgtgtgtgtgtttttaaattctacCACTTTCAAAGTTGTGAAGGCTGCAATGTATAACAACACTTACAAGTAATTGTATTGTACCATccatttaattacacaaaataaaataacactctCGATAACTGAGTCCGAATATGAGATCTCAGTGAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33130 lncRNA downstream 317532 30903669 ~ 30903895 (-) True G26416
TU33115 lncRNA downstream 346049 30800411 ~ 30875378 (-) True G26403
TU33076 lncRNA downstream 609734 30610218 ~ 30611693 (-) True G26370
TU33039 lncRNA downstream 766799 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 783439 30431806 ~ 30437988 (-) True G26352
TU33235 lncRNA upstream 92196 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA upstream 92196 31338845 ~ 31342792 (-) False AMCG00007822
TU33340 lncRNA upstream 439122 31685771 ~ 31686432 (-) True G26598
TU33372 lncRNA upstream 534989 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 558310 31804959 ~ 31805927 (-) False AMCG00007835
AMCG00007814 mRNA downstream 77023 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007815 mRNA downstream 109689 31103778 ~ 31111738 (-) True AMCG00007815
AMCG00007812 mRNA downstream 239407 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007811 mRNA downstream 273501 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007810 mRNA downstream 296927 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007821 mRNA upstream 76085 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007822 mRNA upstream 92067 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007823 mRNA upstream 108711 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007824 mRNA upstream 183667 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007831 mRNA upstream 454687 31701336 ~ 31727439 (-) True AMCG00007831
TU31949 other downstream 5589835 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5956476 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6953506 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7248762 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10748723 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3622786 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5993440 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6248262 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6320968 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6324308 37570957 ~ 37571488 (-) True G27439

Expression Profile