RNA id: AMCG00007818


Basic Information

Item Value
RNA id AMCG00007818
length 6952
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00007818
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31270675 ~ 31302984 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTCACCCGGCTTGGATTCTCTCGTTCTGCTGgctgcctcactgtgtgtgGCTGGCGTGAAAGCTGTGGTGCCCACGGAGGATGATGTCACACCCCGCATGAGCTTCCTTTACAaTGCAAAGGAGAGGTCAACCAGGAGGTTCTCTGTAGATGGGGTTGTCAATTATACCTCCCTTCTtctgagcgagagagagaatgtgttgTATGTGGGTGCGAGGGAGGCACTCTTTGCGCTCAATCTTTCTGACATCAGCAACGGCAAACTCCACAAGAATCTGACGTGGAGCACTCCAGAGAAGAAAAGAGATGAATGTGGTTTTAAAGGAAAGAATCTGCAGACCGATTGCTTCAATTACATCAAGATTTTACTCCAGCTAAACAGCACACATCTTTACGTGTGTGGAACATATGCCTTCAGTCCCATCTGTGCATATATAAGTATCTCAGACTTCTCACTGGTCAAGAGCAGTAAAGGAGATATTGTGACAGAGGATGGGCGCAGCCGCTGCCCTTTCGACCCAGAATATAAATCCACGGCCATCATGGTTGATGGGGAACTGTACGCCGGGACTGTCAGTAACTTCCAAGGAAATGAGCCCATCATTTACAAGAGTCTAGGCCAAGGAACCCccttgaaaactgaaaactccCTGAATTGGCTTCAAGATTCTGCATTTGTAGATTCGGCCTATATCCAAGAGAGTCTGCCCAAAGGCAACCCCGTCGGTGACGATGATAAAATCTACTTCTTCTTCAGCGAAGCGGGCAAGGAATTTGACTTCTTTGACAACACCATCGTGTCGAGGATCGCTCGGGTGTGCAAGgGTGATATGGGAGGCGAACGCGTGCTGCAGAAGAAGTGGACAACCTTCCTGAAAGCCCACCTCCTCTGCTCCCTCCCCGACGATGGCTTCCCATTCAACATCATCCAGGATATGTTCGTCCTAACACCAGACCAGGAGAACTGGAAGGACACCATCTTCTACGGAGTCTTCACCTCCCAGTGGTACAAAGGTGCGTCGGGGAGCTCGGCGGTGTGTGCCTTCAGCATGGATCAGGTGGAGAAAGCCTTTAATGGGCACTACCGCGAAGTCAACCGGGAGACGCAGCAGTGGTACACCTATAACCACCCAGTCCCCGAGCCCCGGCCTGGAGCGTGCATTACGAACGCTGCAAGGAAAATGGACATCACGTCATCGCTCCACATGCCTGACAAAGTGCTGAACTTCGTGAAGGACCATTTCCTCATGGACAGTGTGATTCGCAGCCAGCCGCAGCTGCTGAAGCGCAGTGTGAGATACACTCAGATCGCTGTGCACAGGGTCCAGGCCATTTCCAGAGCCTACGATGTCCTCTTCATCGGCACAGACGACGGGAAATTACACAAAGCCATCAACGCTAACAACAAGATGCACATCATCGAAGAGCTCACCCTGTTTGCTGAACCCCAGCCGGTACAGAACATTGTGCTGGACTCGGAAAAGGGTGTGCTGTTTGTTTCCTCACACTCGGGGCTGGTGGAGATTCCTGTGGCAAACTGCAGCAACTATCAGAGCTGTGGGGAGTGTGTCCTCTCCAGGGACCCTTACTGCGCCTGGACTGGGTTGCTGTGTCAAGACGTTAGGCATCCTTCTGCCGGCAAGAGccATTGGAAGCAGGATGTGGAGGAAGCAGACACTGAAGCCATCTGTAACATCACAATGTTCAGCCCCCGCATGAGCAAGAGTTCAAGCAAGCgTGACTCTTCATGTCAGATGTTCATTTTACCCCCCAACACTTTCAAAGTCCTGCCCTGCAAGTTGCGCTCCAACCTGGCTGAGAGGAGGTGGGAGTACAGCCAGAGCACCAGCCAGTTCCTCTACCCCGAGCCGGACGGGGGCCTGGTGGTGGTGGCGCGTTCGGAGAAGCCAGAGACGTACGAGTGCTGGTCTGTGGAGAAGGGATTCCAGCAGCTACTGGCCAATTACTGCATTAGAGCCGAGGGACCCCTGGAGAGCACCACCTCTCTGCCTGGCCACTCCAGGACACCCCTGATCCCTGAGGAGGGGCCTCTTATTCTGCCTGGAGAGAGCCGCTCCAGCCAGCAGAGCACCAAGACCTACTGGAACGAGCTGCTAATAGTCTGTGCCCTCCTGGTCTTCTCCTTCCTGGTCTTCTCCCTGTTCGTGGTCTACCGCAACCGGGACAGGATGAAGTCCATGTTGAAGGAAGGGGAATGCCCTAACATGCAGCAGAAGAAGCCGAGGATGGTGGGCAAGCCTGCCGAGAGCCTGCCCCTCAACGGGAGCACGGTGCCGGCCTCCACCTCTGACCACAAGGGCTACCAGACCCTCAACGACAACTACATCTGCAGCACCCCCACTCATGAGTCCCCCGATCACACAAAGAGCTTTGTGGAGTCCGAGAAGCGGCCGCTGAACTTCAAGGAAAGCCGTGTGGAGATCTCTCCCACCTGCCCTCGGCCCAGAGTGCGCCTGGGATCTGAGATCAAAGACTCCATAGTGTGAAGGGGCCACTTGGCTGACACACCAGTCCCAGCTGAGGAACAGAAGGTCACGTTTTGAGTCCTTCGCCGACATCAAACAACGGAGGACAGGAAACACTTTTAATGCAATGCAGCACTTGTGCCACATCACCAATGGGGCATTTCATTTGTTAATCTCtactctccctcccctccccactcACTCACCTCACTcgctcactcacacacacacacacacacgtttattTTAGCCATCATGTTCAGTGGTGAGGGAGCTCGAAAGTCTTGAAAGTCCCCAAAGTACTGTTTGCAAGAAGTGAAAGTTACTTTTGAGTAGCCTAAGgctctgaattatttttaatggaaattcctttttttcctctggaGTGTCAACACTGCGCAATGTTGACAGGTATACCAGGGTTGGAAAACCTGCTTTGCTGGTCTATTACTCTAACTGTGGGGGCCAGGCAGCCAAGACTGCTGGGGAAGGTTTGAGatcctgctttttattttctggcttCTGGGCTCAACAATCCGTCCTATTATTCTAAGCATATCAGCTTGACAAAAGGAAACTCGCTCTCTGCAGTCAAACTGAAAACTAGGAATTTTCAGTTCCCCTCTGTGTCCAACATGAACCACAATATTTAGCTTAGCCgaacatttgattaatttatgttACTTCGTTTtgataatatatatgcataaatatatatatatagatatagataaatagatggTTATATAAACAGTCTAAGAAGAAAACCACTTTGTTTAATAAGATTCTGAATTTCAAACATAAAATCAGCATTTCTTTTATCCATTTCCACTTACATGTAGGGAGACCATCTCTACTGAGTCCAGATAAGGGAAATGTGAGATCTTAAAGTGAGTTATGGACCAGACaggacaaaacacacacatgtttcTATATGTCTAATGGGAAGACcacagatgtatttttcaaaagacTCAGTATTCTCTTTGGAGGTGCTCTCCCTTCTTCAGATGAAATCAGAGCGTAGTGACACACGTCATAAGGAAATCCTGCAAAAGTAAAGAGCTACCGAGGATCAGCTGAGATGAGAGAGGGTCTCTGTGATCACAACGCCAAGCCCAGCACAGAAATCAGTTGCCCTCTTCTCAAAGGAAGAAACCAACAGAGCATTCAAAAGCGTGCATGCTATGcaaaaagtacaattaaaatagctgtgaaaacattttgagTAAAACAGCACATACGTTTTATGGACGAAGAATGGAAAAAGTGCATCTAATTTGGAGTTCAGGGACCACTACAGAGAATATAATTTTGTCCTAGTgggtttcattttattcttcTTTATTAAACCCTGAAGGCATAGAAGAACCACCATgcaattctttttttaactgttgTGGAAATAAAAGAGCACAGTCTCTGAGGAGATCTCTGGACCCTGTTGCTGTACACTGTTGTGTGCCAAGCTCAGTGCTGATAGAGCCTGGAGAGAGCGCAGCGCTTCCAAGCAGAAAAGCCTCTTATTCTGCAGAACGATGTTGGCTCCCGTCTCAGTGGAAAGGGGCATTGTGGGGGAATGAGAAGTGGTACCATGGGCGATTCACTGGCTGTGTGCAGCTTGTGTTACAGCAACTGCATTTTGAACATGATGGTGACGAACACTGCCACCatggaaaaacaacatattttttgtgtgttttcataacATAACCAAAATTAGCATACGCTGTGCCAAAAatgacttgttttttgttttttttttaaggtaatttcattgtttttttttaattgacatttcaCACGGTCGGTATTGCTGAACTGCCTTTCTTTTGTAcgagtttgttatttttttatttctcattcaaCGGCAACTATGAAATGTACTGCGTGATCAACATTTGATATGAACTCACAATGTAGCCACTTTTAGAATGTGAAAGCTGCTGTATCTCTCGCTCGGCTTTAGGACTGCAAAAAAGAGAGGGATGAGATACTACACTGCCTCGGACTAAATATCGCATGAAAATGACAACTCCTGAGATGCAAAGCTCTTTGTATACTTCTAACTTATGAGACTAGTTTATGGGGAATCAATGCTCTGTACACTTGACTTTTAACTAAACTGTAAGCCCTTTAGATTGAAAGGTTAAAGAAACACTTGCTTAAAGGGATTTTCAGCATATTTTGGACGGTATTTGCACattcctggaaaataaatacaaataaaataatacaaaaatatatataatatatataaatgcagaaaaacaagaaaaaactaaataagatATTGCAGAGAGACTATTGTGTAGTTTCtcttttttgatttgttttttaaacagtgaGCATAatcaatactgttttatttgcagaTCACTATATTGGGGTACAACCAATAACAATTCTGTCACCACTGAAATTCCAAGTTCATTTTCCACTGATAGGACTCCTCCTGGAGCCAGGAGAGTCCTCAACTACATGCCAGAGCTATTTACGACATGCAACTGAAGTGTTGTGGAATGTAGTTAATTAAGAATAAGTATTCCCTAACTGTTCTTTTTGTAGATTTTGAATTGTGTGCACATAGATATTTGTAGAAGGGAGATAATTTCATGAATTTTGACAAAGTAGCTAAGTAAAGAGCATACGGCACACCAACTGTCAagtgtatatttgtacattttgtattgtattttgaggGATTGTTATGCAAAACGTGTTGTTGTAGAATATGTGGTGGAACTAGAAAACTGCACATTGCTGCTTTAGTTTTCACACTTTGTTTTTGCACAAAATACTGTACAAGCCTTAGTTTGGAGTGGGGTTGTTGTAAATCTTTGTAACGCgttttttaatcatgtttggATGTTTGTTTGGATGTGCTTTGCGAAATGCCTATGAGAAACCCTTTGTGAATCAGTGCTGTGTTTATGGGAAAGTTCCAACAGTCGCTTTCTGGCCAAGTGTCATTATTCCATCACCTGGAGAAGAGTGAATTTCACATGCATGCTTGCAGAGCTTTCACAGGACGCCAGGGACAGCAGCACTGCTGGTGCTGCTTACCACCCAGGAAGGAAGGGTTTGAATTTCCCTCTCAAGTTTATAGGGACATGGTGATATTTTCCTGTAAAGAGATGGTAGTGACCTTGTTGTAAACAGATGCAGGGGTGGAAGCTAGGCAGTCCAGTGGGTACGGAAGAGGACATGTTCCTGGGAGACGCCTAGTTCTGCTAGTGACCTCTTTGGTGTGGTCCTGTGGGAAATGCCTCTACAGCAGCTGGCACTGATGCCCTGGTTCTTCTCCAAAGGCAACATGTTTTGATGAAAGCATCTGCAACATGactcattattattagtgttactAAATCACCATCTGAAAATCATGCAATAGTAAAGCTGCCGCCCTGCAATACAAAGTTCTACTTCTTTACAAATCAGTCCTCTACCTTAAAAACTCTCCAACTCTACAGGTGATTgcctttacatttacaaattaatcatTGTATTAATATTCTATTGATTTTAGGGAAATCTTTGTGCAAATTTGCAACGTACAGCAGAAAATCACTAAAGATTATGCCTAGTTTAAGTGCGATCTCAGTCAGCCGCTCATTAAGAATCCTCTACACTGAAGAATGTCGCTCCAGGTCTGGCTGTGAGGCCGGGTTCTACAGTGCGCCCTGCTGTCATAGCGGCCGGGGAAACGACTGAGGAGCCCAGCGTTGCACAAGACGGGGAATTCAGAAGGAGTCTTGGTGTTGTGATGGTTAAGATAAAGGGCCTTGTTACCAGTTGGTCCCTGTTTGAAGCCCGGGCTCTATCGCTCGCTGTCTGTGCTATTTAGACCTCCTAGTGTTCCTTAGAACGTGATGTCAAATGTAACACAGATCCCGTTATAAGCGACTCCAGCAGTCTTTGTTGGTGCATTGCCCTACACGCTGTATGCCCCATTGAATAAATGACTAGTAATACTTTGCCTTTATATGCTaccaaatgttttaaagtgGTGGAACTAATTGGCCCCTAGTCCAGACCCTGTGTAAGAGGTTAAGTGTGATATAATACACATTGAAAAGGCAGAGGGTTATAATATTGCTTGGCTTTGCTGTGCCAGCGCACCCCATTGGCTCCTGGCTTGGTTGGCTGGGCTTCAGTGTGAAGTATGTCTCCAGACCCTGCGCCTCATTCGAAACAACTCTGCTGTGGAGACTTCTGTTCGTAACAAGGCAACACGTTCCTGTGACTCCACTGTCATGAATTTCAATGGTCTTGTCATTCGCCcttgtttttactttgtaaaGTGCCCTGTCATTGTACAAAGAAATTTGTGAACCacgtatttgttttttttttattttgtattattttactattgttattattgttataactatactgtaaataaagaaatgcactttattttaatttttttaataaaaaatataagaatgttttaaaa

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33208 lncRNA upstream 52353 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 163426 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 164051 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 164654 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 170159 31100271 ~ 31100516 (+) True G26458
TU33260 lncRNA downstream 111170 31414154 ~ 31424691 (+) False AMCG00007827
TU33371 lncRNA downstream 478654 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 519756 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1319276 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1584806 32887790 ~ 32888040 (+) True G26704
AMCG00007813 mRNA upstream 134428 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007816 mRNA upstream 172318 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007808 mRNA upstream 326948 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 355210 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 496214 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007820 mRNA downstream 2052 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 22098 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007827 mRNA downstream 118226 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007825 mRNA downstream 192955 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007826 mRNA downstream 205687 31508671 ~ 31509949 (+) True AMCG00007826
TU32939 other upstream 1495640 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2266902 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2815968 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3175934 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7076194 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4308132 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6842000 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6865586 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7052945 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7129061 38432045 ~ 38436595 (+) True G27551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_01007844_01029438.mRNA True 2601 mRNA 0.50 14 CI01000013 1007844 ~ 1029459 (+)