RNA id: AMCG00007819


Basic Information

Item Value
RNA id AMCG00007819
length 2859
RNA type mRNA
GC content 0.45
exon number 17
gene id AMCG00007819
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31325082 ~ 31339183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAATGCGCTGCTGCTGCGCTCTGCCCGCCTTCACACGGATTGCACGCAACAGCAGCAGCGCCGATATGTTTCCTTCCGCGCGTTGATTTGCACAAAGGGACTTTACACTGTGGAGTTCTCAAACTTTACTTAGGACTGTGGAGCCGAGAGCAGCTGGCGGAGCTGTACCTGCAGATCCACTCCCTGTCCGACTACACTCTGCTGCAGCAGTACGAGTCCCTCATTGACACACTGCTGGGGGAGCAGAAGGTCCAGAGCCTGGAGACCGAACAGCTGGAGAACCTGCTGAGACGGACAGAAGAGGTTACGAGTCGCCAGCTgacagagctggaggaggacaTGATGCAGCAGCTGGCCAGTGTGgagcagagagtgagagaggagGATCGGCAGAAACTAGAAGCAGCCACCGTGGAAATCCAGAGGAGACATGAGAACAAGGTGGCAGATTTACAGCTCGCCATGGAGATGCTGAAAAAGCACCAAGAAGAATCCTGGCACAACAGTTCTAGAGAGGATGTTAATCAGCTGAAAGAACAAATCGCTGAGATGACACAGgataatGAGCAGCTCAGAAGTTCTCTTATGAAAGCCCAGATGAATGTTTCTGTTCTGCAAGTAGAACTGGACAAGCTGAAAAATGACTATGCTGACCAGAGACTACAGCACGAGAGGGAGAAAGAGGTTCTGAAAACGATGTTGGTGGAACGTCAGTCCTACTCCAATCAGGTTGAATTCCTCCAGGCAATGAACAAGAAACTGTATGACAGCAATGATGGCTTGCGATCAGCCTTGGTGACCTACGTGGGGTCAGGCAAGAAGAGGCATCTCTCCCCAAGGGATGATAGTCCATCAATGAGAATAAAGCCAAGTGAACGAAGTATGCAGAGCCACAGCAGCTTAGCTAGTGAGGAGGATAGCATGACCGTGGATAATTATGCGCCCAATGACACCAAATACTCCCATGTGGCCAACTGGGCTGACCGGTACCTGGACAGTggagtgtctgtgtctctggaTATGGGGGATGACTCTGGCAGCGAGTTTGAAAGTGACAACAGTCAGGACTCTGTGGAGACCGTACATTACAGCTATTCTTATGTGCCACCTGACATGGAGatttcagatttaaagATGGAGGAGACGGCGTCTGTGGCTGCCAGTGGCCGGAGTTCCATCACCTCGTCCATCAGGAGACGACTCCCTGCTTTCACACCCAAGCGGGCAGATGCGGTTGATGTGGATGTGCCTGGCGCCTTGTACAGACTGGTTCTGGCTGGGGACGCAGGATCAGGGAAATCCAGCTTTCTGCTCCGACTAAGCATGAATGAGTTCAGAGGAGATATTCAGACTACTTTAGGGGTCGATTTTCAAATAAAGAAGATGCTGGTTGATGGGGAGCAGACCACCCTACAGATTTGGGACACTGCAGGCCAGGAAAGGTTTCGCAGTATCGCCAAATCTTATTTCCGGAAAGCACACGGAGTGCTACTGCTATATGACGTCACCTCAGAGAGTAGCTTCCTGAATGTTCGTGAGTGGATTGATGAGATACAGAACTCCACAGAGGATCACATCCCAATGTGTCTGATTGGGAACAAGAGTGACCTGAAGATGGGGATGCCGGAGTCTGGGTGTGTGGACACTTCTCACGGGGAGAAGTTAGCCATGGCGTACAATGCCTTGTTCTGTGAGACGAGTGCTAAAGATGGAACAAACGTAGTGGAAGCAGTGCTTCACCTCGCCAgGGAAGTGAAAAGGAATGTGGGTCTGAGAAAGAACTCTGAACCACAGATAAAACTGAGTATTGCTGATGGCAAGAAGGCTCTGAGCAGCTGCTGTGGGGTGTAGTGGTCTACCCTGAGCTTTGCGCAAGACCTCTCACCAGCAAGGAACATGTGTTGCATATGTTGGCAGTCTCCGAAACTGCAGAAGGACTCCTAATGAAGAAGGTTGCTTTGCAGTGGAGCTACACTGGAACCACTTTTAGCTTTGTTCCTGGTGTCATTTCAAGGTATGAAATAACAGCAGTGTTTCCAAAACACATGCTCCAATAACAATGGCCAGAAggactttttgtatttttatttaaaccttcTGCACCCGACATGCAAGTTCAGTGTGTTTTACTAAAGGATTCTCCAAACTTTCCTcacactttttagtttttgataTTCAGATTCaagagatttatatatatataatgtaaataaagagaacaaaacaattaatgtaCTAACCTATATTTAGCGCAGTTTTTAGTTCTAACCCCCTAATCACAAGCATTTTGCCCTCAAGAGTTTTTGTTACCTGACCTCTGATGTAGTAGGAGTCTGTTTTTCAACCACCTAGTATTCGATTACCAGTAACTTTTCAATGTAATACTTCTAAAGGGACTGTGCTGGTAAAAATCCACACTTCTGGGTGagctcattttgtttgtttggatgcACTTTAAATGGGAAGTAGACAATACTCCtggttttattctttttactGGGTACAACTTAAAATGGTTAGGCACAcgttattttttccccaaatatGTAACATCTGAGCATAATGTTCAAATTCCTCTTTTTACCTCTTTTCTGTAAAAATtggtattgtaattgtattttgctatgagatttacatgtatgtatattatacatgtattttatatatagattttatttttatttttaaataaccttccAAATCAAGCATTTCACCTTTTAATACCTCTTGCACTTAATGAGGGACCAATGGTATGaatgtttacatttcagttcTGGAACGAAAACATTGTATGCCATTggcagtattttgtattataattgtataataaatgcTCAAAGAGTTTGATACATAACA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33208 lncRNA upstream 106760 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 217833 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 218458 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 219061 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 224566 31100271 ~ 31100516 (+) True G26458
TU33260 lncRNA downstream 74971 31414154 ~ 31424691 (+) False AMCG00007827
TU33371 lncRNA downstream 442455 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 483557 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1283077 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1548607 32887790 ~ 32888040 (+) True G26704
AMCG00007820 mRNA upstream 7686 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007818 mRNA upstream 22098 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007813 mRNA upstream 188835 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007816 mRNA upstream 226725 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007808 mRNA upstream 381355 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007827 mRNA downstream 82027 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007825 mRNA downstream 156756 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007826 mRNA downstream 169488 31508671 ~ 31509949 (+) True AMCG00007826
AMCG00007833 mRNA downstream 196146 31535329 ~ 31536009 (+) True AMCG00007833
AMCG00007832 mRNA downstream 217252 31556435 ~ 31559455 (+) True AMCG00007832
TU32939 other upstream 1550047 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2321309 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2870375 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3230341 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7130601 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4271933 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6805801 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6829387 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7016746 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7092862 38432045 ~ 38436595 (+) True G27551

Expression Profile