RNA id: AMCG00007820


Basic Information

Item Value
RNA id AMCG00007820
length 2838
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00007820
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31305036 ~ 31317396 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCCTTCTCATTTTTCCTTGCTCTTGATTCTGGCCGGCTGCTGGGAGGCACTGGGAGCAGAGCACTACAGTAACTCCCCTGTCTGCAACACCACCCTGTCTAACGGATCCTTTCCATGGACGCATTACAGGCTTCCAACCAGTGTTGTACCTGAACATTACTACATTTACATCCATCCAGACCTCAACACCAAAACCGTAACTGGTTACGTTCAAATTCTGATCGAGGCTTTGAATGACACCAGCTACATCGTGCTGAACGGCAAGAATCTGACCATCACGGGGGCTTTTCTTAAGGAGCTGAGCCCAAACTACCAGCGGAAGAGGCTCGCCCTTCATGTGCTGGAGTCCGTGCCCACCGAGCAGCTGGCCTTTATTTCTGAGATACCTCTGGTGGCAGGGAGGAAGTACCAGTTGTCTGTCAGATTCTGTGCCACACTCTCCAACAGCTTCTCTGGGGTTTACAGAGCCTCCTACTGGACAAAGAATGGGATCTCAAGAATGATAGCGGCGACTCACTTTGAGCCAACCTCAGCCAGGAAAGCTTTCCCATGCTTTGATGAACCAAACATGAAGGCAGTGTTTTCTGTTGTCATCGTCCGGGACTACAATCGCAAGGCCATCTCCAACATGCCAAAGGTCTCTACAAGGACAAGGGGAGACGGGCTGCTTGAGGATCACTTCTGTCACAGTGTGAGGATGAGCAGCTACTTGGTGGCCTTTGTTGTGAATGACTTTTCCTCCAACAGCACAAAATCGAAAACAGGCACTGAGGTATCTATCTTTGCCCCTAGAGACCAGATCAACCAGACTCGCTATGCTCTGCAAGCTGCTGTAAAGATCTTGGAGTTCTTTGAAGAATACTTCCAGATTCCATACCCTCTTCCAAAAATAGACCTGGTGGCTATACCCGATTTTGAAGCAGGTGCCATGGAGAACTGGGGCTTGATCACTTACCGGGAGACCTCCCTGCTGTACGACCCTCACACCTCCAGCCCTCACAGCAAACTGTGGGTCACTCTGGTCACTGCACATGAGCTCGCGCACCAGGCAAGTGAGACCCCAAGACAATTAACTGTATGGTTTGGGAACTTGGTTACCATgcagtggtggaatgacctctGGCTGAATGAGGGCTTTGCCAGCTACATGGAGTATGTTGCCACCAATCACCTGGAGCCCAGTTGGTGTGTGGAGGACCAGCTGCTCACAACAAGTGTCTACAGAGCGCTGGAGAAGGATTCCTTCATGACCTCTCATCCCATCTCTCTGCCAGTGAAGAACTCGCAGCAGATCAGACAGATGTTCGATGTAGTCTCCTACTGCAAGGGTGCCAGTATACTGAGAATGCTTCATAACTACCTGACCGAGGATGTGTTCACTCAGGGGATTCGAGACTATTTAAAGCAGCACAGCTACAAAAACGCACAGCAGGATGACCTGTGGGAAGCGCTGGAAAAGagtgCATTGAAAGAGGAAAGGAAGGTGGAAGTGAAAGCTATCATGGACACCTGGACAACTCAAAAGGGCTACCCTCTAGTGTCTGTGAAGGTTGATGGAAGGAAACTAAAACTCCACCAAGATATCTTCAGTCTTTACCCCGAGAATGGCAAGAGCTTCCTGTGGCAGATTCCATTTACTTTTTATACAAGCAATTCACCGTCTGTCATCACTCACCtaatgagaaagagagaagAGACCATCGATCTTCATCATGATGTGGCCTGGATCAAAGCCAATGTCAACTCTACTGGCTTCTACAGGGTGTCCTATGATCCCCACACCCTGCATGTCATCATCAGACAGCTGCAGGAGAGCCACACTGTGTTTAGCAAAGCTGACAGGGCCAGTCTGATTGATGATACCTTTCATCTCGCCAGCCAGGGCTCAGTGCAGTTCAGCGATGCGTTTGCGCTCTGCCTGTTCGTGAAGGAGGAGAGGGAGTACCTGCCCATAAGGATGTTTATGGCTCACATTGGAAAGATGATGAGCAAGTTCTCCTTCAGCAGACAACGTTGTGCTCTCGGCCTGCTCAAGGATCACCTGTGGACCCTCCTAGGGGGGCTAATCCAGGCCCAGCACTGGGAGGAGGGAGGCTCCCTGTCCCAGCAGAAGCTGCGGACGCTCCTGCTGGCCACCGGCATCGGGCTGCACTCCCCATCTTCTAGACAGCGGGCACAGGAGCTCTTCCACCACTGGATGGCAGCTGATGGGAAAATCCAGCTGCCCAGGATGCTGCGAGGGCTGATCTTCCGCATGGGCATCAGGAGAGGCGGGCACCGGGAGTGGATGTTCTTACTGCAGCAATACCTGCGCACCGTCTCCAGCTCCGACAAAGTGCTCCTCCTGTCGGCGCTGTCCCGCACACGCAATCCCAACAAGAGGAAGTTGCTCGAAACAGCACTGCAGAACCGCTTGATAAAGATTCAGGACTTTGCAGTTATAGTTGGTCAGCTGGCCAACAGTGTGGAGAGCAACGAGCTGGTGTGGAGATTTGTGAGACACCACTGGGATGAGCTGCAGAACAAATTTTCTTTAGGTTCCTCTTATCTGTCCCGTATTGTTGTCTCCATTACATCTAAGTTCAACTCCAAGGAGAAATATGAAGAAGTGTggaagttctttgtttctgagAAGAAGCTTGGAGGTCTTGCCTTTGTCAAACAGTCCCTGGAAATTATCAAAGTCAACATGCTATGGCTGCAGAGAAACATGAGGCCGGTCAAGGCTTGGCTTCAGCAGCAGTATCCGCACACATATGCCACATACAGTCACTGCAGAACCAAGGTCTCATATCGCTTTGTTTGGGGAGCAGCAATACACATTCGTTATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33208 lncRNA upstream 86714 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 197787 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 198412 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 199015 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 204520 31100271 ~ 31100516 (+) True G26458
TU33260 lncRNA downstream 96758 31414154 ~ 31424691 (+) False AMCG00007827
TU33371 lncRNA downstream 464242 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 505344 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1304864 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1570394 32887790 ~ 32888040 (+) True G26704
AMCG00007818 mRNA upstream 2052 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007813 mRNA upstream 168789 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007816 mRNA upstream 206679 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007808 mRNA upstream 361309 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 389571 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007819 mRNA downstream 7686 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007827 mRNA downstream 103814 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007825 mRNA downstream 178543 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007826 mRNA downstream 191275 31508671 ~ 31509949 (+) True AMCG00007826
AMCG00007833 mRNA downstream 217933 31535329 ~ 31536009 (+) True AMCG00007833
TU32939 other upstream 1530001 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2301263 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2850329 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3210295 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7110555 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4293720 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6827588 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6851174 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7038533 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7114649 38432045 ~ 38436595 (+) True G27551

Expression Profile