RNA id: AMCG00007821


Basic Information

Item Value
RNA id AMCG00007821
length 348
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00007821
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31322734 ~ 31323081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATATTCGGATGGATTCCACCACAAGTGACACGGACAGCAAGCCGGATTTACAGAGACTTTTCTCCGCGTGTGATCTGAATAAATCGGGAAGGATAGAGTATGAGGACTTCGCCACAGTGTGCCGAGAGCTCCGCGTTGGCAGCACCGAAGTGGGCTTTCTGTTCAACAAGTTCGACGAGGATCAGGACGGGTACATCGATTACAGCGACTTCTCGGCCCGCTTCGCAGAGGTGTCGGGGGCGCTGGAGCTGGCGTCCCTCGGGGGAGCGCGGCCGGCCGGGAGGAGCGCCTGGGACGACTTTGAGGACAGGAGAGGCGCGGAAATGAGTTACCTGGGGAGGTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33227 lncRNA downstream 76085 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 76085 31244540 ~ 31246649 (-) False AMCG00007817
TU33130 lncRNA downstream 418839 30903669 ~ 30903895 (-) True G26416
TU33115 lncRNA downstream 447356 30800411 ~ 30875378 (-) True G26403
TU33076 lncRNA downstream 711041 30610218 ~ 30611693 (-) True G26370
TU33235 lncRNA upstream 15764 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA upstream 15764 31338845 ~ 31342792 (-) False AMCG00007822
TU33340 lncRNA upstream 362690 31685771 ~ 31686432 (-) True G26598
TU33372 lncRNA upstream 458557 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 481878 31804959 ~ 31805927 (-) False AMCG00007835
AMCG00007817 mRNA downstream 95095 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007814 mRNA downstream 178330 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007815 mRNA downstream 210996 31103778 ~ 31111738 (-) True AMCG00007815
AMCG00007812 mRNA downstream 340714 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007811 mRNA downstream 374808 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007822 mRNA upstream 15635 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007823 mRNA upstream 32279 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007824 mRNA upstream 107235 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007831 mRNA upstream 378255 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007836 mRNA upstream 472614 31795695 ~ 31797044 (-) True AMCG00007836
TU31949 other downstream 5691142 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6057783 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7054813 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7350069 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10850030 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3546354 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5917008 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6171830 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6244536 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6247876 37570957 ~ 37571488 (-) True G27439

Expression Profile