RNA id: AMCG00007822


Basic Information

Item Value
RNA id AMCG00007822
length 3234
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00007822
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31338716 ~ 31342792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGAACTCGGAAACcttcaactaaaaaaaaaaaaaaaatgacgagtacgtataaaataatatacctTCCGTTTATTTAGCTTAATAACCGCGCATTGCACAAAAGCTGTTAAATATCTATCGATTGCTGAGTGTCTAAAGGCGCCTTTGTATGTGGGAGTGCGGCAGGACGGCATTGGGAGACGTTTTCTAGGCCGGAGTGTTGTTTACAATTTGTTCATCttcaaaaatgcaataaatctTCGACGCCTACATTAAAATGAGATGATGTAatgactgtgttgtgtgtaaatGTCATTCGTTATACCTGCGCCAAGCAGAGGGGTGATTAGTACAGTTAACTAATTTGATATTTATGTGCCTGTGTTTTCCGTTTAGTAAAAACCAACAATCAAGCCATTGCTAGCGCCGAGACTCTGAGCGGTGATCCCTCTGGCTTGTGTGTAGTGTGGGCCACTAGACGGGCATTTGCCCTGAATCCAGGTGTCCTTGTCCGCTGTGTCTTGCGTATGCCTGGATATTGGATGCGCGCCGTGCCAGCCAGCTCATTGAGGCTAGTCACTGTTTTGCGTAGTTTTCTCTTTGAATTCATAATCCGCAACCTGACTGTAACCAGCTCTGATTTTTGACAGGGCTTTCTGTCGGGGGGTCGACGTTTTCCTCGGTCTCGGAATACAGGGTCCCTGGCTGTGCTCCGGAGCGCCCCCCTTGCCACGTAGCCGAGATGTAGGCTAGTCTGCACAGAGTCGGGGTGATTTCTGTGCGTCTCGTActtcaattcaataaaatagtCCAGTCCGCCGTGACTGCACTCTTCCTACAGTTGGAGTAGAAATCGGTGTCCAGCTCACTGTGCATGCTGTGCTTTTATCTGTGATTTTTATGGATCTGCCAGGCGCTGTCGGGTAGTTTAAAGCGCCGTCCGCTGCAGCGAACGTTCTAGAACAATCCCAAACCAAGCGTGGGGGTGTCTGGACCGACACCGGCACTGAGGCACTCGTCTGCTTCTTGGGAAGTGCCAAAGTGGATGGGAGATGAAAAGTTTTTGACTGCCTGCATGCTCAGAGCGTCCTGGTTACATTGTCTATAGTAAAAGGGGGAAATCAGCGTGAACTTGCCCGTCAGAAGAATGCCAAGAAGCAAAATGCAGACGGCAAGGGCAAGAGGAATGACGATGGCTTGTCTGCAGCTGCCAGGAAGCAGAGGGATGCAGAGATTATGCAGCAAAAGCAGAAACAGGCCAAAGATAAACCAAAAGACCAACCCAAATAACTGAAAGAAGACTAAACATCCAGACAAGACTTCCCACGTTTTTTgccagaaagaaacaaaatcaattcaAGTCTTCTtggtattaaaacaaacttttttttttttttttcttgtctaaGTTCTGATGTCTAGATAACATGCATTATTGTAATCTTTCCTATGGGGGATTATATGGTTTGTAAGTTTCAGGTGAACTAATGACTTGGCAGGTTTTAGCAGAGTTCTGAATGACATGGCTACAAAAGTATGCTCGTGTTTGTCAGCATGCATGGGCTGTGGTCTCATGAACAGAATTTAGTGTAAAGAGAAGCAGATGTCACTGCTTGGATCAACACaatcttgtatttttgtatcaaaGTTTGCCCCCAACTtgaaatttatttaataaattgtaGCTTTTTAGTTCATGGGTTTTGTTCAATTGACTTAAACTGTTCTGTGGTCTCCTCTTGCATTTTATTGAAGATTCTAGTTTTTAGCATGATTTTATCTCAAACCCTTTTCAGAGTGAATGCTTGTGATGCATATGCAATCAGGTATTTGGCTAATATGTATGAGAGTTGATGCTCTAGAAAATATACAGCAGTGTGCTTAGAGAATATGTGGGTGTCAggaaggattttgtttttaacagggCCTTGATTTATTTGAGTTCTGTAAATGTACAACACTTTGTTTTGATGAAAACTGGACTATGCaaggtattcattttaaagcatttgtaaATAAGTATAATACATAATGAGTGGAATGGTTCGTGCACTGAAGGACAGGGTCCTGCAGCTCCCTTTCAATTAACtgaccaaaaccaaaaaaaaaacttggactGGAGTAAGACTGATCCAATAAAGGATTGAACTCTGGTAAAGACAAATTAACTTATGACCTAAAAATAGGCTTGGTATTCCAAAAGTAACTCCCAAACTTGGCTATAgcaatattaaacatttctgcTGCCTTGATCAGCTGTCTTTGTagtttctcatttatttcagaaagagcAGTTCTAGTGGCCTTCCATTCATTTAAACTGCTCATGAATACCTCACCAACAACTCAACTTATAGGGCTATATCTCTAGAGCTAGCCTGAGAACCCTGTCTTCATCCAAGTCCTTCCATATCCATAGCAATGGAAATCtaggtttttatatatataagccaATGTAACTAAAACCAAACCCACGTCCTACACATGTAGGAGCGGTGTAAACCCCccttattggaaaaaaaaacaaaaacctaaagaACAGTCTAGGATGGGAATAAGGTTCTTAAATGTCAATGTTCTATTATCCCAAAACAATAGTGTAAATTGCATCCCGTGCAGGAACAGCAAGTTCTAGAACTTTAATCAAACATtactaaaatatacatacaccaCATTATAATACGGACTTCAATTAAGGAAAGATCtgagatcaaatgaaaaatgaaattgaagCTTTGGAAATACCTACCTCTGATagtgcaaaaaatacataaccCTCATCATGTTATGTATCAAACTCTTTGAgcatttattatacaattataatacaaaatactgccAATGGCATACAATGTTTTCGTTCCAgaactgaaatgtaaacattCATACCATTGGTCCCTCATTAAGTGCAAGAGGTATTAAAAGGTGAAATGCTTGATTTggaaggttatttaaaaataaaaataaaatctatatataaaatacatgtataatatacatacatgtaaatctcatagcaaaatacaattacaataccaATTTTTACAGAAAAGAGGTAAAAAGAGGAATTTGAACATTATGCTCAGATGTTACatatttggggaaaaaataacgTGTGCCTAACCATTTTAAGTTGTACCCagtaaaaagaataaaaccaGGAGTATTGTCTACTTCCCATTTAAAGTgcatccaaacaaacaaaatgagctCACCCAGAAGTGTGGATTTTTACCAGCACAGTCCCTTTA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33227 lncRNA downstream 92067 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 92067 31244540 ~ 31246649 (-) False AMCG00007817
TU33130 lncRNA downstream 434821 30903669 ~ 30903895 (-) True G26416
TU33115 lncRNA downstream 463338 30800411 ~ 30875378 (-) True G26403
TU33076 lncRNA downstream 727023 30610218 ~ 30611693 (-) True G26370
TU33340 lncRNA upstream 343065 31685771 ~ 31686432 (-) True G26598
TU33372 lncRNA upstream 438932 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 462253 31804959 ~ 31805927 (-) False AMCG00007835
TU33399 lncRNA upstream 480036 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 1070574 32413280 ~ 32417500 (-) True G26684
AMCG00007821 mRNA downstream 15635 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007817 mRNA downstream 111077 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007814 mRNA downstream 194312 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007815 mRNA downstream 226978 31103778 ~ 31111738 (-) True AMCG00007815
AMCG00007812 mRNA downstream 356696 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007823 mRNA upstream 12654 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007824 mRNA upstream 87610 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007831 mRNA upstream 358630 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007836 mRNA upstream 452989 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007835 mRNA upstream 462193 31804899 ~ 31816151 (-) True AMCG00007835
TU31949 other downstream 5707124 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6073765 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7070795 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7366051 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10866012 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3526729 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5897383 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6152205 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6224911 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6228251 37570957 ~ 37571488 (-) True G27439

Expression Profile