RNA id: AMCG00007823


Basic Information

Item Value
RNA id AMCG00007823
length 528
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00007823
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31355360 ~ 31358391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGTTTCTCTTCTTGTCTTTGCCAGAGTTCCCGATATCCCCCCCAATTCACCCCTGCTATATGAGTTGCAAATCCTCCAAGTAAGAGACAAGCTGGATCCCCTGACTCTCCCCGCCTCGGACTGCATCCGGATGGGCAACCAGAAGAGAGAGCGTGGCAACTTCTACTTCCAAAGGGAGGAATACAGCAAGGCCGCCAAGTCTTACTGCATGGCTCTGGATATCCTCACTGCCCCGGCTAGTGTCGGCAGCAGCGTGGCAGAGGCGGAGGCCGAAGAGCTGCGGGACTGCCGGGTAAAGTGTCTCAATAACCTGGCAGCCGCCCAGCTGAAGTTGGAGCAGTACGGAGATGCACTCAGCACCAGTGACAACGTGCTGCTGCTGGACCCCCACAACGTCAAAGCGCTCTTCCGGAGAGGAAAGGTGAAGCCCCACGCTGAATTACAAAAAGGCCCAATGACTCACAGAGCTGTGATGCAGGCTTTTCAGTGGCAACCTATCATTACATACAAGGCTGGGTCATAG

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33235 lncRNA downstream 12568 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA downstream 12568 31338845 ~ 31342792 (-) False AMCG00007822
TU33227 lncRNA downstream 108711 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 108711 31244540 ~ 31246649 (-) False AMCG00007817
TU33130 lncRNA downstream 451465 30903669 ~ 30903895 (-) True G26416
TU33340 lncRNA upstream 327380 31685771 ~ 31686432 (-) True G26598
TU33372 lncRNA upstream 423247 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 446568 31804959 ~ 31805927 (-) False AMCG00007835
TU33399 lncRNA upstream 464351 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 1054889 32413280 ~ 32417500 (-) True G26684
AMCG00007822 mRNA downstream 12654 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007821 mRNA downstream 32279 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007817 mRNA downstream 127721 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007814 mRNA downstream 210956 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007815 mRNA downstream 243622 31103778 ~ 31111738 (-) True AMCG00007815
AMCG00007824 mRNA upstream 71925 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007831 mRNA upstream 342945 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007836 mRNA upstream 437304 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007835 mRNA upstream 446508 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007843 mRNA upstream 1020044 32378435 ~ 32378904 (-) True AMCG00007843
TU31949 other downstream 5723768 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6090409 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7087439 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7382695 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10882656 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3511044 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5881698 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6136520 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6209226 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6212566 37570957 ~ 37571488 (-) True G27439

Expression Profile