RNA id: AMCG00007824


Basic Information

Item Value
RNA id AMCG00007824
length 1131
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00007824
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31430316 ~ 31446063 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGGTATTCTCTATGGAGCATCTGCTCAGCCTTCACCGTCATTGCACCCCTGATCATCACTCTGCCGTGTTTCCATGCTGGCAAGATCCTGGTGGTTCCAGTTGATGGCAGTCATTGGGTGAACATGAACATCCTTATTAAGGAGTTGCACTCCCGGGGGCACCAAATCTCAGTGGTGCAAGCAGAAAGCTGCTTGTACATCAAGGAGAAGTCTCCTCACTACACCTCCATCACAATCCCTTCTACCAAAGCCATGGATACAGATGTTTTCCAGCAATTCTTGCACAGCGTGTTGAAGTTGAAGAGAGAAAGCACATTTAGTTTGGACCACTTCACCTTTTTTTGGAAAACCATGAGCATATTTTCAAACTTCCATAAAGAGGTGTGTGAAATGGTAACTCTTATGTTTGAAAATCAGGAGTTAATGCAGACTCTCAAAGACACACAATACGATCTGGTTCTTGCAGACCCTGCCATTGGTACAGGAGCACTGCTGGCCCACTACCTTCAACTCCCTCTGGTTTTCAATGTCCGCTGGACTATATATGGGGAAGGCCATTTTGATATTGCCCCCTCACCAGTATCCTACATCCCATACCCTGGACAGGAGGTGGAGGAGATGGTGAGAGCAGAGCAGCGGCTCTGTACCTTGTACTCCTGCGTTCCAGGAGAGAGGTTCTTGATCTTGGAGCCCAGCTGGATGAAGCGCTCGGTGACGCTGCCGATCCTGGAGTGGAGATCTCTGTACTCATTGTACTCCGCAGAGAAGTCGTCCTTTGGAGCCACCGATCTTGTGCCTTGGAAGGAAGCCGTTCTGGCTTTCCGAGAGGTGGCCGTGTGTCCTTTGAAATTCTGTCTTGAAGTGCAGGCTGGAGTTCACTTGAACAGAGGGGTTGTGCATGGCAGTAGGGACAAGGAGTCCATTGGAGTGGGGCTGCTGGCTGGCTTTCCTGGGTCTCAGAAGGCACTGGAcgtttctgaagaaaacaaaacGCAAGCAAATGAGAAACAGCCCGACATTGACAGACGGGTTACAATTGCTATAACATTAAAGAGCACCGCAGACAGCCCCTGTGCCCGGCTGCTCACTGAAGAGCCCTCATCTGCTTCCAGCGCTGCAGTCTGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33235 lncRNA downstream 87524 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA downstream 87524 31338845 ~ 31342792 (-) False AMCG00007822
TU33227 lncRNA downstream 183667 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 183667 31244540 ~ 31246649 (-) False AMCG00007817
TU33130 lncRNA downstream 526421 30903669 ~ 30903895 (-) True G26416
TU33340 lncRNA upstream 239708 31685771 ~ 31686432 (-) True G26598
TU33372 lncRNA upstream 335575 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 358896 31804959 ~ 31805927 (-) False AMCG00007835
TU33399 lncRNA upstream 376679 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 967217 32413280 ~ 32417500 (-) True G26684
AMCG00007823 mRNA downstream 71925 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007822 mRNA downstream 87610 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007821 mRNA downstream 107235 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007817 mRNA downstream 202677 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007814 mRNA downstream 285912 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007831 mRNA upstream 255273 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007836 mRNA upstream 349632 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007835 mRNA upstream 358836 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007843 mRNA upstream 932372 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007842 mRNA upstream 1082625 32528688 ~ 32804157 (-) True AMCG00007842
TU31949 other downstream 5798724 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6165365 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7162395 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7457651 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10957612 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3423372 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5794026 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6048848 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6121554 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6124894 37570957 ~ 37571488 (-) True G27439

Expression Profile