RNA id: AMCG00007826


Basic Information

Item Value
RNA id AMCG00007826
length 405
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00007826
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31508671 ~ 31509949 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCCTGACATCGTCGGCCATAAGCGCAGCGAAAACAAGAACGAAGGGCAGAATGCGCTCATATACTGTAAGTCTGCGGGCTATCCTCATCCAGCCTGGACGTGGCGTAAGGTGAAAGAGAACGTGTTGATGGACATTGACAACTCCTCGGGGCGCTTCTTCATCACCAACAAAGATAATTACTCCGAGCTGATCATCGTGAATCTGGAGATCAACATAGACTCGGGGGAGTATCAGTGTAACGCCACAAACATCATTGGCACTTCATCCATTAAAACCATCCTGCGCGTGCGCAGCCACTTGGCACCTCTGTGGCCCTTCCTGGGCGTGTTGGCAGAGATCATCATCCTGGTGGTCATCATCGTGGTGTACGAGAAACGCAAGAGGCCGGACGAGGTGCCCGAC

Function

GO:

id name namespace
GO:0031399 regulation of protein modification process biological_process
GO:0031400 negative regulation of protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33260 lncRNA upstream 83980 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 290349 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 401422 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 402047 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 402650 31103954 ~ 31106021 (+) True G26461
TU33371 lncRNA downstream 271689 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 312791 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1112311 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1377841 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 2279991 33789940 ~ 33794941 (+) False AMCG00007854
AMCG00007825 mRNA upstream 10860 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007827 mRNA upstream 68293 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007819 mRNA upstream 169488 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007820 mRNA upstream 191275 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007818 mRNA upstream 205687 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007833 mRNA downstream 25380 31535329 ~ 31536009 (+) True AMCG00007833
AMCG00007832 mRNA downstream 46486 31556435 ~ 31559455 (+) True AMCG00007832
AMCG00007830 mRNA downstream 70777 31580726 ~ 31618878 (+) True AMCG00007830
AMCG00007828 mRNA downstream 145048 31654997 ~ 31662592 (+) True AMCG00007828
AMCG00007829 mRNA downstream 154697 31664646 ~ 31683335 (+) True AMCG00007829
TU32939 other upstream 1733636 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2504898 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 3053964 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3413930 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7314190 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4101167 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6635035 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6658621 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 6845980 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 6922096 38432045 ~ 38436595 (+) True G27551

Expression Profile