RNA id: AMCG00007827


Basic Information

Item Value
RNA id AMCG00007827
length 4192
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00007827
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31414154 ~ 31440378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACGTCAAGATACCAGCCCCTTCCTCCGACTCCTCGGGAGCTCTGCGCATCTTCTCCTTCTACCTATCCAGCGAGAGTAAAGACAAACCTCAGGCCGGCTTTGACTGTATACACCAGTATGTCTCTGGGGAAGGTCGACAACAGCTGGAGTGCCAAGGCAGTATTCAGGACAAGATCACCGTGTGCGCCACCGACGACTCCTACCAGATGACCAGGGAGCGCATGTCGCAGGTGGAGAAGGAGACGTGGAGCCGGGCCGCAATAGAAATCAAGCCGGGGTCAACGTATCCAAGTAAATGTGTTAAGATTCAGAAGAAACATGGCCCACCTTCAGCCACGGACAGCTTCCCTTACCACAAGCATTCCCCCACGAACCCCGGCGCGAAGAGGAGCATCACACTCAGCACTGTGGCACAGAGGCCTCTCCGAGATCGCATCATTCACTTACTGGCCTTAAAGCCCTACCGGAAACCAGAGCTTATCCTCTGGTTAGAGAGGGACAAGGCCAGTCCGAAGGATAAAGCTGACCTAGTAACTGTGCTGGATGAGGTTGCAAAACTAAACCCCAAAAACCAGGGCTTCACATTGAAAGATGATTTCTACAGGCATGTTCAGAGGGACTGGCCAAGCTATACTGAGGAGGAGAAGCAGCTTGTTCACAGGCTTCTGGCAAGGAAGCTGCAGCCTCTCAACAATAGCCAAGCGAAGAGTTTCCAGTCAAACCCTTCGTTCCACAAAGCCTCAGGGGATTCTCCTTCGCATCTCAGCCCTGTCAAGAATCTTTCAGTGaaacgTCCAGTGCCTTCTGAGACCCAGGAAAGCCAGCCTAATAAGAAACAGAAAGTATTGAATAACAACTCACACCAGCAGCCCCACTCCAATGGACTCCTTGTCCCTACTGCCATGCACAACCCCTCTGTTCAAGTGAACTCCAGCCTGCACTTCAAGACAGAATTTCAAAGGACACACGGCCACCTCTCGGAAAGCCAGAACGGCTTCCTTCCAAGGCACAAGATCGGTGGCTCCACTGATGCACACAAACCGGAGAGGGAGGGCCAGGCCCACCCACCAGCATCCCTGCACCCTGCCCAGCCTGAGTTTCCCACTTGCACTGACCCCCTCCTCTCCAGCAGCCAGCACAAGAAGAAGAAGTCcaagaaacacaaagagaaagaaCGGGAACGGTTAAAAGAAACCGAGAAGAACGAGTGGCCTGAAAGGAGTCCGGATCTTAAGCAGAGTTTGAAGAATCTGAAAGACCCTGATCGTGCAAATACACCTGTCACTCCTACCTCCCCTGCAGACGTGCCTGACTATTTACTAAAGTACAGCGCTATCGCGACCCCTGAGCAGCGGCAGACCTACAAGGACGACTTCTCTGCGGAGTACAATGAGTACAGAGATCTCCACTCCAGGATCGGCAGCGTCACCGAGCGCTTCATCCAGCTGGGCTCCAAGATCAAGAACCTCTCTCCTGGAACGCAGGAGTACAAGGTAGTGGAGGACCAAATATTCGAGGAGTACAGAAAGTATAAGAAGAAGTTCCCTGGCTACAGGGAAGAGAAGAAGCGCTGTGAGTACCTGCATCAGAAGCTGTCGCACATCAAGCGCCTTATCCTGGACTACGACCAAAACCACACACCTGCATAGTCCTGGTGTGCTCTGCAGCTCTTGTGGACAAAAAGACTACCCAGGGACACGCTCCCAACTGTGACTTTATATcagaaagaacagaaagaaagaccCAGACAGtgcttttcctctttctttcactCTGAAGCTGTGCAGTAGCACCGATTTTAAGTTGCGAGACACGTTGCTCCTGCGCAATGGGCAGAGACCACTGACTTGTGATCAGATTTTGCCCTTTAGCTTAGTTTTCTTGGTGGGAGGAGGCTAGTGTAGTTGAACTCCCAAATGgtgcagaaaatgaaatgtgaaaaggaaAGCAGACAAAACCAAACTCCCTTTTCAACCCCAATTGTGTTAAGTAGTATCTGTGTTATTCCCCGCTCCTCACACCAGGTGTTAATGTTATTTCACAGGCTGgacggttaaaaaaaaatgtattgacaaAAGGGGCTTCAAATTAAGACACTCTCCTAGTCCATGCATTACACTATTATTACACTAATAATCAAGTACCTTATGCAGTTTGCAAGTCTTAATGCAGCAATGTGCAGTCCTGCTGTGTTATTATTGTGACACTATAATGTTTCATTTGGAACCAGGATTGGAGTCAGGTGAGCTTAAGTGCTGTGAATTTTCCACCAAGGAGAAATGAAGCTTGACGTTAGTGAGCTAACCGTTTTAGAGATCCGGAAACCTGCAGACGTTTGCGTCGTGATGTGGCAAGGACAATTCATGATTTTAAACTCAAAGCTTGTTTTTccaaacacaaactgcatttaGTAGAGGATTGGAACCACGTTTTAATAGTTTATTGCATCCAATATCTCAATCTGGGTATGCTTGGTTTGGATTCCTTGCCTATATTTTCTACAGTTAATTCAGTGGCCAGACCTTGGTTATCTTGAGGAATCTGGACAGTTTAGggatgtatatataaatttaagGAAAAAGGCACATTTGTGCTTTTTGGATGGCAGTGAAATTTGCACAGAGCACTCGCATGACATTCCTAGGTCATGGCCTCACTCTGGGGGGGTCATGATCTACTTTAAGTGAAGGGTATCAAATACATACCaagctttatatttttattttacaagtcaAATCAATTTATAGTTTGATGAAACAATTTTAAAGGGAATATATACATCCTCCCCCTCATCATTTTACCTAGTGCTAGTCTCTTCAGGAGTACTGTAAAAGGGCAGCACACTAAGCAGTATCCCTTTATCAATCCTGGTTTCCATAGACAGGAGTGCTCTGTAAGTGTGTGCGCACAGAGATTGTAACCCAGGAGGGATGTGTAGATCTTCATGACATAAGATTAGTGAGGAAGGCTAAATGTGGAAAGACTGACAAATGTCTTGCCTGATTCTCAAggtattttacacatttctttCGCGGCTTTTCCACCAAGTATTCCAGTGGATTTCGGAATCCAACCTGAGACCTGAGAATGCCTTCTTCCTATACATCCGTCCTATTAGTTACTGATGCATGTTCTCCTTTATTATCCTCACATTGTATTTTTGGATTAattccattatatttttaacctaGGAAAAAATGGTTTGCATTGTTCCGTTCACTAAAGTTCCTGGTTTGTTGTTCCTGTATGAGATtaagggagggggtgggggtagcTTGCTTTGCCATTCAGCATATCTAATCCACCTATGGAGATATGCTGCTACTCCATGTCATTATCTCTGTCTTGGATTGATGTGGGGCTCTATGCATCATTTGTATATGTAGGCTTATTAGAGTCACTTCCTCAATCAAAGCGATTTATGGAGCACGTTTCTTACCAGCATATGAATTCCCATTTTCTAATCTGTCTGATGAAGATGCGGTAAGTGGAATGTGCAGATCATATTTTATCAATCCATTTTAAACCCAGTTATCTAGATGTAAAAGGGGCATCTTATCTAGACTCAACTGCAATATCATAAGAAGGAAACCTTATTACATGGGTTTGCCAAAAtaggattgttttattttgtactattcctgttctttgttttatataaattggTAATGCTTGCCTTAAACCAGATCACCTAAACCAGTGCAGAAAGTACTGACTGCCAATGTATCCCATCTCTGAGAATACACCAGGGGGCTGTTTTGGGCTCttcacttcagtgttttttaagGATGCAGTGTCTCTAATTAAGATGTCAATCAGCATACGTATTTGCTTTTCGAAATGGGTACttatttgcaattatttattgCTGATTCgtgaattttgtgttttgttttaaaatggggAATGTTGTACCAGTTGTTTTGCCTTAAGCTGCCGGTCCCTGTAATTCCCAAAGACTGGTTTTGTATCTGCCTTAGATCTCAGTCCATTCTAGAGTGTTCAAAGAAACTGTTATCCCTGTGAAACATGAAATTCCTACAGATTGCTATTGCTATTGGAATAGCCAAAACTCTTCAGCCAGTCTTATCAAGGGCTTTGCACCAAAGTGTCAATGGAGAAGCCATCTTTAAAGCTTTTTGCTGCAATCCCTagtccccttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33208 lncRNA upstream 202888 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 313961 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 314586 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 315189 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 320694 31100271 ~ 31100516 (+) True G26458
TU33371 lncRNA downstream 341260 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 382362 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1181882 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1447412 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 2349562 33789940 ~ 33794941 (+) False AMCG00007854
AMCG00007819 mRNA upstream 82027 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007820 mRNA upstream 103814 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007818 mRNA upstream 118226 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007813 mRNA upstream 284963 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007816 mRNA upstream 322853 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007825 mRNA downstream 55561 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007826 mRNA downstream 68293 31508671 ~ 31509949 (+) True AMCG00007826
AMCG00007833 mRNA downstream 94951 31535329 ~ 31536009 (+) True AMCG00007833
AMCG00007832 mRNA downstream 116057 31556435 ~ 31559455 (+) True AMCG00007832
AMCG00007830 mRNA downstream 140348 31580726 ~ 31618878 (+) True AMCG00007830
TU32939 other upstream 1646175 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2417437 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2966503 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3326469 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7226729 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4170738 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6704606 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6728192 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 6915551 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 6991667 38432045 ~ 38436595 (+) True G27551

Expression Profile