RNA id: AMCG00007829


Basic Information

Item Value
RNA id AMCG00007829
length 3702
RNA type mRNA
GC content 0.57
exon number 22
gene id AMCG00007829
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31664646 ~ 31683335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCATCTGGTTTGTCACCAGCAGCAAACTTCCAGGAATCTGCTCTCCCGTCTGGCACAATACAGGCATGTGTGGAGAAGAGGCAGATGTTCCTCAGCAGATGCCCTCCCCAGACAGGGTCCCTTGTCCCAGACCCGGATGAACCCCCTAAACATCCAGATGCTGTCCAGGAACCTGCAGGAGCAGATCTTCCGGGGAGCCGTGGTGGACTATAGGGAGGAAGACGTGGAGCGCAGCATGAAGCACCTACAGAGACACGAGCTCTGGGGCTGCGAGACCTCACTTCTCCCAGACGTAGAGCTCTGTCTGCCCCGGATGTATGGTGCCAACATTGACGAGCACTTTCGCATCCTGGCCCAGAAACAGAGCCTGCCCTACCTAGAGGAAGCCAGCCGGCTTAATCGGGCCGAGTTGCCGCCAATGCCTGGGGAGTGGGCCTGGGAGCTGGGCTGGACCCGGTATGGCCCTGGTGGGGAGCGCAGGAGAGTGGATTTCCCAGAGGAGAAGGCTCTAGTATTTGACGTGGAGGTGTGCATGGCGGAAGGCCACTGTCCCACACTGGCTGTAGCTGTCTCTCACACCGCCTGGTACTCTTGGTGCAGTAAGAGGCTGATAGAGGAGCGCTACACCTGGTCCAGTCAGCTGACCCTGGCTGATTTCATCCCCCTGGAGACTCCAGCCAACTCCACTCGACCCCCGGAGGGGCAGTGGATTGAGAGGCTGGTGATTGGGCACAACGTCAGCTTTGACCGGGCGCATATCAAAGAACAGTACCTGCTCAAGGGCTCCAGAATGCGATTCCTGGACACGATGAGCATGCACATGGCGATCTCTGGCCTCACAGGCTACCAGCGATCCCTCTGGATGGCCAGCAAGAAAGGCAAGAGGCGGGGCTTGCAAGAGGTCAAAGAGCACATCAAGAGGGCAAGCAGACGCAAGGAAGGCCCTTCGATTGGCTCATGGGACTGGGTGGACATCAGCAGCATCAATAACTTGGCAGACGTCCACGCGCTGTATGTAGGGGGGCACCCACTGGAGAAGGAGGCGAGAGATATTTTTGTCAAGGGTAGCATGAGTGACGTTCGAGAGAGCTTCCAGGAGCTGATGAGGTACTGTGCTCTGGACGTCCAGGCCACACACGAGGTGTTCAGGGAGCAGCTGCCCCTTTTCATGGAGAGGTGTCCTCACCCTGTATCGTTTGCTGGAATGCTGGAGATGGGTGTGTGCTATCTGCCTGTCAATCAGAACTGGGGGCGTTACCTGGAGGAGGCCCAGGGTACCTTCGAGGAGCTGCAGCGGGAGATGAAGAAGTCGCTGATGAACCTGGCAAATGACGCCTGCCAGCTGCTCGAGGATGAGAGATACAAACAGGACCCCTGGCTTTGGGACTTAGAGTGGGGTGTTCAGGAGTTCAAACAAAAGAAGGCAACAGGCAAGAAGAAGAAGCAAGCACAAGCCGAGAATCCTATTGAACCAGTAAGCCCGGTGAAAGACCTGGAGGAAGATCCAGGCCCTCCCACAGAAGAGGAGGAAGCGGCACCCCCTTCTGCTAGAATTGCACTGGAGCGTCTGAAAGAGACCGTAAACCTGTTGCCCAAGAGGAGACAGCACTTGCCTGGGCACCCAGAGTGGTACCGTAAGCTGTGTTTGAAGATGTCCGATGCAGAGTGGTCTCCTGGGCCGAGCCTGATCAGCCTGCAAATGAGGGTCACTCCCAAACTCATGGGTCTGACCTGGGATGGCTTCCCCCTCCACTACTCAGAGAGGCATGGCTGGGGCTACCTCGTCCCAGGGCGCAAGGACAATCTGGAGCAGCCAGAGGACACCGAGAAAGCCAGCTGCCCATATAGGGCCATTGAGACTGAGTACAGGGAGTATTGTAACCGCAAAGGCAAAGAGCAGCCCCACTGTCTGGACAACACTTTGTCTGATGAATTCATGCTGACTGACAGCAACCTGTGGCAAACAGTGGAGGAGCTGAGCCAGATGGAGATTGTGGAGAATGGGACAGAGGAGGTTTCTGGACCGAGGAGGAGAAAAGGCAGGACCACTGCGTGCATTGTAAATGAACTGAGATACAAAGGTCTTACTGGTCTCAAAAGGCAGCAAGTATCTCTCTTCTccccactaatttattcagcatcagcatttaaatttattttaaagcagttcCCGGAAGTGGAAATTCCTTCTAGTGAGAACCAGCCAACGTATCACCATGGTAATGGACCCTACAATGATGTTAACATCCCTGGATGCTGGTTTTTCAAGCTCCCGCACAAGGATGGAAACGCCAACAATGTGGGCAGCCCATTTGCTAAAGACTTCCTGTCCAAGATGGAGGATGGCACATTGCAAGCAGGTCCAGGTGGGACAAATGCCACACGGGCCTTGGAGATTAATAAGATGATCTCCTTCTGGAGGAACGCACATAAACGCATCAGGTACCTGCTCAGGATGAACGCCACACTACTACAGGAAAGGAAGGTCGTTTGGCTGAGGAAGGGAGAGCTGCCTCGCACTGTCACCAGAAATGCTGCTTTTGACGAGGAGGGGCAGTACGGTGCCATCCTGCCCCAGGTTGTCACAGCTGGTACAGTCACCAGGAGAGCTGTGGAGCCCACGTGGCTCACTGCCAGCAATGCCAGGCGGGACAGGGTGGGAAGTGAACTGAAAGCAATGGTGCAGGTGCCCCCGGGGTACCATCTGGTGGGGGCCGACGTTGACTCGCAAGAGCTGTGGATTGCTGCAATCCTGGGGGAAGCTAACTTCGTTGGCATGCATGGGTGCACTGCGTTCGGCTGGATGACCCTGCAGGGGAAGAAGAGCCAGGGCACTGATCTGCATAGCCGCACCGCTGCCGCTGTGGGCATCAGCCGTGAGCACGCCAAGGTCTTCAACTACGGACGCATCTACGGGGCGGGCCAGCCCTTCGCCGAGCGCCTGCTCATGCAGTTCAACCACCGACTCAGCCTGCCCGAGGCAGCAGCTAAGGCCCGGCAGTTGTACGCCGTCACCAAGGGGATCCGCAGGTACAGGCTGTCCGAGGAGGGCGAGTGGTTGGTGAGGGAGCTGGGCCTCTCCGTTGAGAAGGACGAGAATGGCACCGTCTCTCTCCAGGAGCTGCGCAGGATAACAAAACTGGCCAGCCAGAGctcaaacAGGCACAGGTGGGAGATTGTGGGACAGAGGCTGTGGGCAGGGGGCACAGAGTCAGAGATGTTCAACAAGCTGGAGAGTATTGCTCACTCCCCGCTGCCCTGCACACCTGTCCTGGGCTGCCGCATCAGCAGGGCCCTGGAGCCCAGCACAGTGAAGGATGAGttcATCACTAGTCGGGTGAACTGGGTGGTGCAGAGCTCGGCGGTGGACTACCTGCATCTGATGCTGGTGTCCATGAAGTGGCTGTTCGAGGAGTATGACATCGATGGGCGCTTCTGCATCAGCATCCACGATGAGGTGCGCTACCTGGTGCGCAGCGAGGACCGGCACCGGGCGGCTCTGGCCCTGCAGATTACCAACCTGCTTACACGCGCAGTGGACATTGACCAGTGTCTGCGTAAGGAGGTCAACATGGACTGTGCAACACCCTCAAACCCCACCGGCATGGAGAGGAGATGCGGCATCCCTCAGGGTGAAGCCCTGGATATCTATCGGGTGATTGAGCTCACTAAAGGCTCCCTGGCTAAAGGGAAGTAG

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005760 gamma DNA polymerase complex cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02332 POLG; DNA polymerase gamma 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33260 lncRNA upstream 239955 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 446324 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 557397 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 558022 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 558625 31103954 ~ 31106021 (+) True G26461
TU33371 lncRNA downstream 98303 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 139405 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 938925 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1204455 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 2106605 33789940 ~ 33794941 (+) False AMCG00007854
AMCG00007828 mRNA upstream 2054 31654997 ~ 31662592 (+) True AMCG00007828
AMCG00007830 mRNA upstream 45768 31580726 ~ 31618878 (+) True AMCG00007830
AMCG00007832 mRNA upstream 105191 31556435 ~ 31559455 (+) True AMCG00007832
AMCG00007833 mRNA upstream 128637 31535329 ~ 31536009 (+) True AMCG00007833
AMCG00007826 mRNA upstream 154697 31508671 ~ 31509949 (+) True AMCG00007826
AMCG00007834 mRNA downstream 111638 31794973 ~ 31800664 (+) True AMCG00007834
AMCG00007838 mRNA downstream 132908 31816243 ~ 31818992 (+) True AMCG00007838
AMCG00007840 mRNA downstream 521671 32205006 ~ 32219672 (+) True AMCG00007840
AMCG00007839 mRNA downstream 642287 32325622 ~ 32356646 (+) True AMCG00007839
AMCG00007837 mRNA downstream 709270 32392605 ~ 32398918 (+) True AMCG00007837
TU32939 other upstream 1889611 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2660873 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 3209939 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3569905 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7470165 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 3927781 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6461649 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6485235 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 6672594 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 6748710 38432045 ~ 38436595 (+) True G27551

Expression Profile