RNA id: AMCG00007831


Basic Information

Item Value
RNA id AMCG00007831
length 5062
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00007831
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31701336 ~ 31727439 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGTGCAGAAACAGCGACGCTcttaaatactaaaacaaacgagcactttacaaaaataaagacattgaaTCTTAGGTTTAAACTGTAGCACATAGCTCCCCTTTTTACAGTAGTTTCGAGGGTGAGTGCATTGTcctttgtaaaacaaaacaagcaaaacttTGTTTTTGATGAGCTTTTGTTATTGTGCAATCAGAGTTGGGGGAATACAAGTTGCAACAGTTTAATCAAAACATCGAATCTTCATTGGCCCTGGTATCCTAAGATGGCTTTAATTGGTGCCCAAATAGCTAGAAGCACTTATGGCTGCCAATAGGCAGAAACATGGCTCCTAAAGTGCCAGCACATTGCAGGGCTGAGGAAACAGCAGTGCAGGTGGCTATCAGAGTACGCCCCCTGCTACCTAAGGAGCTGCTGCACAGTCATGAGAGTTGCATTACTGCACACCCGGAGGAGAAGACGGTGACCCTCGGCCATGACCGCCACTTCAAGTGTGACTTCGTTTTTGAGGAGAACAGCAGCCAGGAAGAAGTGTACTCCTTATGTGTGCAGCCTCTCATCGAGGCCTTCTTCCAAGGCTTCAATGCCACAGTGTTTGCATATGGGCAGACGGGTTCTGGCAAGACATATACCATCGGAGAGGCCAATATCTCTTCCTTCAGTGCTGACGAGCAGGGCTTGATCCCACGGGCCGTGGCCGAGGTCTTTAAGCTTCTGGATGAGAATGACCTGCATGACTACTCTGTGCGGATATCTTATTTGGAGGTATACAAGGAGGAGTTCAGGGACCTTCTGGAGGTGGAGACATCCAGCAAGGACATTCACATCAGAGAGGATGACAAGGGCAATATTGtgctgTGCGGGGTGAAGGAGTGTGAAGTGGAGGGTCTGGATGAGGTGCTGAGCTTGTTAGAGACTGGGAATGCTGCCAGGCACACAGGAGCCACACAGATGAACCCACACTCCAGCCGCTCACACACCATCTTCACTGTGGCCATGGAGCAGCGTCGTGGTGGCTCCCGGGCCACCAACTCCGGCACCCACCTCCTGACCTCCAAGTTTCATTTTGTAGACTTGGCCGGCTCCGAACGCATCCTCAAAACTGGTAATACTGGTGAGCGACTGAAGGAGAGCATCCAGATCAACAGTGGGCTGCTGGCACTGGGCAATGTCATTGGGGCTTTGGGTGACCCTAAAAGGAGAGGCACCCACATCCCCTACAGGGACTCCAAAATAACCAGGATCCTGAAAGACTCTCTGGGAGGTAATTCAAAAACCCTGATGATTGCTTGTATTAGCCCTTCTTCCTCAGACTTTGATGAAAGCCTGAACACACTGAACTATGCCAAGCGGGCACAGAACATTCAGAATAGGGCCATGGTGAACTGTCGGGGGGGCGAACCAGGGCGCACTGAGGGATTAGAGCTGCAGATAAAAGCCCTGCGACATGCCCTGGAGAACCGCCATAGGTCTGAAACCCGTATCATCACCCGCTCTGAATCTGAGAGGAAACCTGGAGGCTCTGGCAGAGAGCTGAGTAAGCTACAGGCAGAGAGCTTACACTATCGGACCTGTACTGACACTGCCTATAGGCTGCTGATGGAGCTTCAGGCAGAAGGCACTCTGAGCACTAGCCAGTTGCTGCGGATTAAGGAGTGGCTGTGTGCTGTTGAGGAGGAACGCAGTGAGCTGACCACCGCCTCTGGCCTGGACAGCGGCATCGAGAGTACCTCTGCTGAGGTCAGCACGGAAGCTCTAAAGAACGTTAAGGGGACTGCCAGATACCAGGGTGCTGAGGAAGGAGAGGAATGGGAGAGGAACCGAGAGGAGACCATTGCTCAGCTGCAGGCTCGGGTTGAGCATCTGGAGCAGGAGAACACAGACTTTCTGGCTGCTCTGGAGGATGCCATGGAACAGTACAAACAGCAGAGTGACAGACTTCAGGAGCAACAGGATCTGATTGATGAGCTGCAGCTAAACCTGGCCCAGCCTGCTTCCTCTGGGTTAAATTCAATGGAAAGTGTACACCTACTCCATGTCAAGCCAAGACCGCACACTGCACCCTCGAATTCTGCACGCCTCTGTACTTCAAACATGGTCCATTCCATCCTGTTTTCAAATGGAGAAAGTGGaagtttccatttcaaaaagATGGCCCACTGCAGTCCCCCTTCTGTGGACATGGGACAGTGTGGGGAGCAGAGCCTGGGTCACTGTTTAGCTCACTCTCAGCAAGGTGAAGAGGACCAAGAAGACCTCTGTCAAGACCTTCCCACCCttaacagcagggtaggggagGACACTGAAGAAGAAGGAGATGGGAAGATAAAGAGGTATAGACGGAGACACCTTAATCTCACGTGGACAAGAAGAGAAGTACTGTGTCCAGGCATAAGCAAACCGAGAGGAAATCTGGGTCCTTTACTAACATCCAGGCACAGGCTTAAGTCAATGTATAACAGAGGAGGGACAGTTGAGCATGAAACTCTGGGAGATTGCTACCCTCCGCTCCTCCCAAGTGAGAGGGGCTCACAACGAGGACTCCTCCAGGCACAGCAGAAGATCCGCGAGCTGTCCATCAACATTCGCATGAAGGAGGAGCTCATTAAGGAGCTGGTCAAGACAGGAAAGGATGCCCAGGCCATGAACAGGCAGTACAGCAGGAAGATCTCAGAGCTTGAGGGGGAAGCGGAGCAGGCACGGGCTGAGCTGACTGAGGCACAGAGACAGCTGCAAGACCTTGAGGTGTTGGAGCCCCGGGATCCAGCCGAGAGGTCAAAAGCACAGGAGTGCCGAAGGAAGATTGCTGAAGCGCAGAGCAAAGTGCAGGTGCTGAATCAGAAGCAGCGAGACACAGCAAGACTGGCCTCCCTGTCAGCACAGAGTGAGCGGCGTGTCCAGGAATTGGAGAGGAACGTACACCACATGAGACAGCAGCAGGATCTGCTCCACCGCCGCCTACGCCAGGAGAGCCAGCAAAAACGGCGCCTAGAGAGCGAGATGCAGAGAGGCAAGCACCGCGTCAAGGAGCTGGAGATCAAGAATGAGCAACAGCAGAAGATTTTGAAGATCAAAACTGAGGAAATCGCTGCCTTCCAGAGGAAGAGGCGCAGTGGGAGCAATGGCTCCGTCATCTCTCTGGAGGAACAACAGaaGATTGAGGAGCAGAAGCGCTGGCTGGATGAAGAGATGGAGCGAGTGCTAGATCAGCGCCAGGGTCTGGAGGACCTGGAGGGGGAGTTGACAAAGCGGGAGGAGATCCTAGCCAAGAAAGAGGCTTTGCTCCAGGAACGCAGCGGCCTAGAAAGCAAGAGGCTGCGCTCTAGCCAGGCCCTGAGTAAAGACCTGGTCCTCCTGTCCAGTCGAATTGAGTCCCTGGAGAGGGAGCTTTCAGAGAGGAATGGCCAGCTACGCAGCAGCAGTGCACAGGACTCCCAGCAGATTCGCCAGGAAATCTCCAATCTCCGCCAGGAGAAAGACCAGCTCCTGAAACAGCGTGCTGAGCTGGATGACAAGCTGCGCCAGGGCAGCCTTCTATCACCTGAGGAGGAGCGGACCCTTTTCCAGCTGGATGAGGCCATTGAGGCTCTGGATGCTGCCATTGAATACAAGAATGAAGCCATTACTCAGCGGCAGAGACAGCTCCGGGCCTCCGCCAGCATGCTGTCCCAGTGGGAGATGAACCTGATGGCTAAACTAAGCTACCTATCTGCCTCTGAAACCCGTGCACTGCTTTGCAAATACTTCGATAAGGTGGTGTCTCTACGGGAGGAAGAGCGCAGGCTACAAGTGGCCCTGGCAGAGCTCGAGATGCGTGGAGAGGAGCAACAGCAGCTCATTCTGTGGCTGGAAGCAGCACTAGAGAGACAACAGCTAGACACTGACCGCCGGCTCACGCAGCAGCAGAAGGAACACGAGAGGAACATCCAGCTCCTGCTGCAGCAGTGCAGAGAACAAATGGATGAGGGCCTGGCTGGGAGGCAGCGACAGTATGAGGGCTGGATCCACAACCTTGGGAAAGAGCTAAGCCAGTGCAAGTGGGCCAACCAGGAGCTGACCAATAAACTAAGGAAGCTGTGGGGACATGCCAGCCACCAAGCAGAACAGAGCAAAAtAATGAACATTGAAGGGAAAGCCATGGGCACTGCAGAAAGGCTGCCCTCTGTGGGCAGAACAGAAGAATACACTCAGTATAGTGGGGAGCACCAGGCTGCTGGGCAAGAAAGAGTGCCAAAGCCCAGAGAGGAGATTCGGGAGTTGGTGCATGCCCCTCTTCCCCCTACATGGAGGCGCTCGTCCCTGCCCACTGAGGATCATTCGAGCATGGAGGAGCTACAGCAGCATGGGAACTGCGAGACCCTAGGAAACAGAATTGTTCAGGCTGGTATGACCCCTGGTCCAGTGGGTGtccctctcctcctgcctctcgcCAAGCCCCGCAGGGAGCTCCGCAGGTCCAGCCTCAACGCTCAGCTCTCTAACTGTGGGATGATTGATTTGCGCAAAAACCCACTGTGATGAAAGGTTCCAGTGGGCTGATCCACAGTGCTGGCTTTGCTGGACAAGATGTTACAATGAGTTTAGTTTTTGAACAGAAGCTCTGTTAAGCAGGCTGTGTATTACCCgtgtttatctatctatccatatatTATTGTGCTAGATTTCAGTTTGTTCATTTCTTTGCTGATATACCAACATGCTTATATAAATTGATTTAGTAATTAAATTTTGTGGTCAGTGTCTATCTCTTGTATTTATGCAGGTAtttggggatgtgaaagtattTCATTAACAtcacacaattttttttaaaatgtaaaatgtagtgTAAGATACTACTGCTTAAAGTATTCCTGGactttctgtttaaatattttgccaTGTTAATATTTCCTGTCTAGTAGACACAAATTTATAGCaggattatttaatttttaccaTTCTCAAcgcattattttttctttttacatataGAAACCAATTTTTGATTGCAGTGTGTAAATACAATAAccttttttaccttttttttgtaaaacatattttcttactctttgtgtgtg

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0035301 Hedgehog signaling complex cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33340 lncRNA downstream 14904 31685771 ~ 31686432 (-) True G26598
TU33235 lncRNA downstream 358544 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA downstream 358544 31338845 ~ 31342792 (-) False AMCG00007822
TU33227 lncRNA downstream 454687 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 454687 31244540 ~ 31246649 (-) False AMCG00007817
TU33372 lncRNA upstream 54199 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 77520 31804959 ~ 31805927 (-) False AMCG00007835
TU33399 lncRNA upstream 95303 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 685841 32413280 ~ 32417500 (-) True G26684
TU33540 lncRNA upstream 1864783 33592222 ~ 33640336 (-) True G26764
AMCG00007824 mRNA downstream 255273 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007823 mRNA downstream 342945 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007822 mRNA downstream 358630 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007821 mRNA downstream 378255 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007817 mRNA downstream 473697 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007836 mRNA upstream 68256 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007835 mRNA upstream 77460 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007843 mRNA upstream 650996 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007842 mRNA upstream 801249 32528688 ~ 32804157 (-) True AMCG00007842
AMCG00007844 mRNA upstream 1416117 33143556 ~ 33214893 (-) True AMCG00007844
TU31949 other downstream 6069744 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6436385 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7433415 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7728671 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 11228632 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3141996 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5512650 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 5767472 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 5840178 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 5843518 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000105_01904038_01936686.mRNA True 4682 mRNA 0.51 20 CI01000105 1903685 ~ 1936686 (-)