RNA id: AMCG00007833



Basic Information


Item Value
RNA id AMCG00007833
length 681
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00007833
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31535329 ~ 31536009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACAAGTTGCATTCTTCCATGCGCAAAAGGCTGTACAGCCTACCCCAGCACATTGGACAGAAAGCCTCGATCATGGGCGAGGGAGAAGACAGCGACAAGGACACCCGGAGAAAGAGCATCAAGATGAAGCCCCTGCCTTCGCCGTCCTCCGGGGGCAGCTGCAAAGGTATGGGGGACACCAAAGGCGGGGATTCGGTGATTATGGAGACCGACATCGGGAGACCCATCAAGACCAGCTCGAATGGGGACTGTAGGAGATTCAGAGGCAGCCTCTCGTCCATCACTAGCCGGCACGTCCACGACTCAGCCTCGGCGGAGGAGAGACGGCTCATCACAGAGGGAGATGTCAGCCCTTGCGAGGAGAGCAGCCCGCCCGGGGCTCTGGGCTGTGGGGCAGACCAGGGAGCGCAAGGCAGCGGCTTCAAGGATCAACAGGCATCCCCTGACCAGGAGTCGGGCTTCATAAAGTTGGATGGCATTGACCAAATTCTGCCGGACGACGAGCAGAGATTGTACCAGGCTGGCTTCATTCACAGGCAGTTTGGAGCCATGCTGCAGCCAGGGGTCAATAAGTTCTCCTTAAGAATGTTTGGGAGTCAAAAGGCAGTGGAGAGGGAGCAAGAGCGGGTTAAATCCGCCGGATTTTGGATAATTCATCCATACAGTGATTTCAGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33260 lncRNA upstream 110638 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 317007 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 428080 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 428705 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 429308 31103954 ~ 31106021 (+) True G26461
TU33371 lncRNA downstream 245629 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 286731 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1086251 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 1351781 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 2253931 33789940 ~ 33794941 (+) False AMCG00007854
AMCG00007826 mRNA upstream 25380 31508671 ~ 31509949 (+) True AMCG00007826
AMCG00007825 mRNA upstream 37518 31495939 ~ 31497811 (+) True AMCG00007825
AMCG00007827 mRNA upstream 94951 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007819 mRNA upstream 196146 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007820 mRNA upstream 217933 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007832 mRNA downstream 20426 31556435 ~ 31559455 (+) True AMCG00007832
AMCG00007830 mRNA downstream 44717 31580726 ~ 31618878 (+) True AMCG00007830
AMCG00007828 mRNA downstream 118988 31654997 ~ 31662592 (+) True AMCG00007828
AMCG00007829 mRNA downstream 128637 31664646 ~ 31683335 (+) True AMCG00007829
AMCG00007834 mRNA downstream 258964 31794973 ~ 31800664 (+) True AMCG00007834
TU32939 other upstream 1760294 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2531556 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 3080622 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3440588 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 7340848 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4075107 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 6608975 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 6632561 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 6819920 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 6896036 38432045 ~ 38436595 (+) True G27551

Expression Profile