RNA id: AMCG00007835


Basic Information

Item Value
RNA id AMCG00007835
length 2950
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00007835
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31804899 ~ 31816151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agatatgtattaataattatataaattgtatatgattaatgtgttaaatatattgtaaattatattgttatttttctaaaacaaaacaaaacaaaatttggaaaacaaacgTGCGTTAGTAGTTTTGTACAATTGTAACTACCCCCGGAAAATGTGTAACATTGCGATATTCCATATCGTAACcttgaatacaatacaatacacatggCTTCTTGTGCCCAGAGCCCATGACACCAAGTGAAAATGCAATTTAGGTTGTTGATGAAGACGGTATATTAAATAGGGAATCTGGTGTTATAAGTAAATAATGTATAGTTTTAGTAACAAATTGGGTGGTTTGGCACGGACTGCTTACCAACATTTTGCAGCTTCCGCAAGCACAAGAAACTGGACGTTTGTGAGCAGGACAGTGAGTTCTAGTGCAGTCAGGAACCAGGATGTGGTAAAGACCCCCAATGAGTCCTTGAAGAGCTCTGAGGAATTCAGCATTTATCCTCCACTTCCTCACCATGAAAGCTCTTTGAGATGGGGGGGTAAGACATTTGAGGAGTTGCCCATTGCCCACATCAAAGCCACATACAACAACACTCACATACAGGTTACAGACCATCAAGGACAGTATATGGTGAGGACGTCCTGCGGCACAGAAGGGTTCAGAAATATCAAGAAGTCAACCCCCATTGCGGCCCAGACTGCCGGCATCTCCGCTGCTGCGAAGGCACAGGCAAAGGGTGTGGCGTTCGTGCGGGTGATGGTAAAGGGTCTGGGCCCGGGACGCTTGtcagCCATCAAGGGGTTAACGATGGGCGGCCTAGAGGTTGTGTCCATCACAGACAACACCCCCATCCCCCACAATGGATGCCGTCCACGCAAGGTGCGCAGGATGTGAGGCCAAGGGAACCCACCCTCTCAGCACATGGACTGCAATCTGCCTGACACCCACcacaaataaactttttttttttacaaacatcCTTGTTCACCGATTTCAGTTTAACATTGCTGATACTTACTACTCAAATATATCAAAGCATCTTTCCAATAAATCACACCAGTCAAACATTTGAGtggtggtggggagggaggggggtaaatgttttcattttctaaatgttagtCATTACAAATGTTGATACAGTTTTGGTGTTTACGTACATAAGCTGACAATGGTTACTgaatcattaaatgttttaactttcttttaaagcaaaatattcaGACAAAGATGAAGTCAACAGCTTTTCTATTTCATCAACACAATCAGTACAAGAGCCTGTAGCTTAAAAATGAGTTTGTGATGTGTGGTATTTTAAAGGCAGTGGGAAGAGCTCActggagaaaataaagcatGGAAATAGTTGAGaaatcatttgtgtttgttaccATATAGGTAGGTATGTAACGAATTGGTAATTAACCCTTGGGAGTGAAAACCAACTGGAATGTGAGTTATACTGATGCCCCAGGAATCATCGAACTGTTTTTTTACTAGGAACTGACTAAGACTAAAATATATGTGCTTTAACCTGGATTATCTCAGATGCATCGACATCAGTGTTTTCTGGAGAGGAGAGGATTCACtctcaaaaatataaattagagTTATACATAAGATACATGCATAAGGTTACTGTGGTTCTTTTAGCattgatttatgattttttgAGAGTGACACATTTTATGTCATTCACTTTCAGTTCATGCACATATTGCCTGTATTTGGTACAGACCCTTTCACACAAGTATTAGTAATCACCAGTTCGTGTAGTCTTATCTCTCAGATGAATCCAAACAGATTTTGTTGGTAAGGTGAGCACTGAACACATGCAATAGAAATggtaacaaaatatacatttttattatatttctggatcaatgtttttattacatgttttcaaatatactTATTGGGAAAATAGGCACTGTTCAAGTAGGGTTAAGTGTCACCTCAGAGTCTCAGCACTATGGAAAGCCCATTTGAACAAAACTGGTAAGGACTTGTCTGTGTAGCACAGCTATTGTAATTCAGACTAATGAAAACATAAAGTTGATACATTTTACTTCAGATTTCTATACATGCCTAACAGCCTTTAAAGCTATAATtatcaatcaatatgtttacATGGCACAAGTATTAGGAATTGTAAGGAATATGCATTCTGAATGTtctgtttaaatgcatcagGATTCTCAATATGCTTTTTATATGACAGAATATTCAGTTTATGCTACTGAGTACCACTGCAAACCTCAGAACAGTGAACGTGTGTTTGAAGATAACCTGTAATCTGGTGTTCTTGTAGCCTAATATTTAACAATAGACTTTATTGTACTTCTTCAGAtatgaattttaatatttttagattGTGTTGGTATGTGGGGGCATAATTCAGTGTGCTGTGGTGTTGCAAACTAGAACATTTATGTCTTTAACTGCCAGTGACAACATATTAAGGATTGtacaaacatgtttaatgtcCACATATTCAGAATATGCCATGGCGCGGAAATCCTTTAATATTCCAAATAAAAGGAATATCAATCCCtgaatacaagaaaaacaagtggAATATAAGTGCCCATGTAAACGCAGTGATTGTTAATTAAAGTTGAGGTGATGACACGTttgtaaattacttttcatttcagtgtaATTCTACACTGCAATCAGGTGATGCAGAGCAATGTACCTCTTAGTGTAATTAACAGTCAGAAAGTTAAGTACAAATCTTGTAAAAcaagtttcttttgttttatgttttaaaaatgtcatctTTTCAGTGGAAAAATTCCACAATGGCACACTGACTAGACCATTTACTCTAGCAAGTGCATTAATGTGTCCCGAATCACCTGTTTgtagttaaaatattttaatggaaagagtctattattttaaatacaggaataaacagatctgttattttaaagaaattgatGCAGATTGACA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02948 RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33372 lncRNA downstream 23008 31781638 ~ 31781891 (-) True G26626
TU33340 lncRNA downstream 118467 31685771 ~ 31686432 (-) True G26598
TU33235 lncRNA downstream 462107 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA downstream 462107 31338845 ~ 31342792 (-) False AMCG00007822
TU33228 lncRNA downstream 558250 31244540 ~ 31246649 (-) False AMCG00007817
TU33399 lncRNA upstream 6591 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 597129 32413280 ~ 32417500 (-) True G26684
TU33540 lncRNA upstream 1776071 33592222 ~ 33640336 (-) True G26764
TU33586 lncRNA upstream 1909431 33725582 ~ 33725896 (-) True G26800
TU33637 lncRNA upstream 2170396 33986547 ~ 33987991 (-) True G26847
AMCG00007836 mRNA downstream 7855 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007831 mRNA downstream 77460 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007824 mRNA downstream 358836 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007823 mRNA downstream 446508 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007822 mRNA downstream 462193 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007843 mRNA upstream 562284 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007842 mRNA upstream 712537 32528688 ~ 32804157 (-) True AMCG00007842
AMCG00007844 mRNA upstream 1327405 33143556 ~ 33214893 (-) True AMCG00007844
AMCG00007849 mRNA upstream 1610848 33426999 ~ 33454436 (-) True AMCG00007849
AMCG00007848 mRNA upstream 1686169 33502320 ~ 33507381 (-) True AMCG00007848
TU31949 other downstream 6173307 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6539948 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7536978 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7832234 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 11332195 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3053284 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5423938 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 5678760 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 5751466 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 5754806 37570957 ~ 37571488 (-) True G27439

Expression Profile