RNA id: AMCG00007840



Basic Information


Item Value
RNA id AMCG00007840
length 804
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00007840
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 32205006 ~ 32219672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCAATGTTTTACAGGAGGCTGGATGACGTTTTGTTCAACTGTAGCTGTGACATCCGCTGGATCCAGCTGTggcagcagagaggagaggcagGGCTCCACACCCAGCAGCTATTCTGCATCAACAGCGATTCACAGAAGATCCCCTTATACAATATGAATATCACTCACTGTGATTTGCCAGAGATCAGTGTGAGTCACAGCAACCTGACAGTGATGGAGGGAGACAATGCCACTGTTACCTGTAATGGGTCAGGGTCTCCCTTGCCAGATGTGGACTGGACTGTCAAAGAGCTACACTCTATCAACACACACCAGACCAATGTGAACTGGCCGAATGTCCACTCTATCAATTTGACACTGGTCAATGTGAGCAGGGAGGACAACAGCTTCATGTTAAACTGCATAGCAGCGAATGTGGTGGGGATGACCAATGCTTCAATCCAGCTTTCAGTCCTCTTTCCCCCCCGTATTCTGAAGCTGATGGAGCCTGAGAGACGCCATGATACCTGCATTGAGTTCACAGTGCATGGCAACCCACAGCCCACCCTTCGTTGGCTGCACAAAGGTGTAGAGATCAAACAAAATGAGTTTGTCCGCACTGAAATGGTCTACTACCAGGACCTCCAGGAGGGCTGTTTGAATTTCAAGGACCCCACACACTTTAACAATGGCAACTACACACTGGAGGCCATCAACTCCTTCGGCACAGTCTCTAAGACTGTCTATGCCCACTTCCTGCACCCCCCATTCAGCAATGAGGTGGCCTATGATGGTATGTACCTTGATACATTTTCTCCAtag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33398 lncRNA upstream 382033 31822740 ~ 31822973 (+) True G26645
TU33371 lncRNA upstream 423115 31781638 ~ 31781891 (+) True G26625
TU33260 lncRNA upstream 780315 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 986684 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 1097757 31106714 ~ 31107249 (+) True G26463
TU33452 lncRNA downstream 402588 32622260 ~ 32622530 (+) True G26698
TU33459 lncRNA downstream 668118 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 1570268 33789940 ~ 33794941 (+) False AMCG00007854
TU33616 lncRNA downstream 1769374 33989046 ~ 33990588 (+) True G26826
TU33615 lncRNA downstream 1772506 33992178 ~ 33993982 (+) True G26825
AMCG00007838 mRNA upstream 386014 31816243 ~ 31818992 (+) True AMCG00007838
AMCG00007834 mRNA upstream 404342 31794973 ~ 31800664 (+) True AMCG00007834
AMCG00007829 mRNA upstream 521671 31664646 ~ 31683335 (+) True AMCG00007829
AMCG00007828 mRNA upstream 542414 31654997 ~ 31662592 (+) True AMCG00007828
AMCG00007830 mRNA upstream 586128 31580726 ~ 31618878 (+) True AMCG00007830
AMCG00007839 mRNA downstream 105950 32325622 ~ 32356646 (+) True AMCG00007839
AMCG00007837 mRNA downstream 172933 32392605 ~ 32398918 (+) True AMCG00007837
AMCG00007841 mRNA downstream 309130 32528802 ~ 32850205 (+) True AMCG00007841
AMCG00007845 mRNA downstream 1130422 33350094 ~ 33357685 (+) True AMCG00007845
AMCG00007846 mRNA downstream 1399631 33619303 ~ 33640336 (+) True AMCG00007846
TU32939 other upstream 2429971 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 3201233 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 3750299 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 4110265 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 8010525 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 3391444 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 5925312 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 5948898 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 6136257 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 6212373 38432045 ~ 38436595 (+) True G27551

Expression Profile