RNA id: AMCG00007841


Basic Information

Item Value
RNA id AMCG00007841
length 696
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00007841
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 32528802 ~ 32850205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGAGTCTCCATCAAGCAACATCAGGCTACAACAGCTCCAACCCTTTCTCCACTCAGGTCCCATCTTCAGTTCTCCACACCGATGACAAGACCATTGTGATAAAGGGGCAGCTAGAGAAGCAAGACAGCCCTAGGATGGCGCTGGAACTGATGGTGGGGGACAATACAAGGGCGGAGTTGGTCAGCCTGCTTAGTGTCTGTGTTGGATCTGGACCAGGAAGTGAACCCTGGGACCCTAATGGCTGGAGACTAGTCACCAACAGTATCTGCAGAAAACCAGGCGTCAACTTGATGTGCGATGATGAGCTGAAGAGAGCAGGACATGGATCTTTTGAACAGAAGATGGCCATTTTTGAAGAAACCACCTTGCACGTTGTGAAGTGGTACGATATTCGCTCAGTGACCCTTCTGAGTCTTTACACTGGAGCCCACGCAGTCACTGAGGTTGACAGGTGGGATCGCAAGCGAAAGATGATAAACAAAgtcccctgccctgctgtggTGAAAGAATACAACAAGAACATGGGTGGGGTTCATCTGCTTGACTCACTGATTGCACTGTACCAGAATAAAATCAGATCAAAGAAGTGGTACCACCAGCTGGTGTTCCACTTCCTGGATATGATCATTGTGACCACCTGGCTGCTGTACCGAAGAGATTGTGAAGGCACTGGCATGAGAAAGGAGGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33398 lncRNA upstream 705829 31822740 ~ 31822973 (+) True G26645
TU33371 lncRNA upstream 746911 31781638 ~ 31781891 (+) True G26625
TU33260 lncRNA upstream 1104111 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 1310480 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 1421553 31106714 ~ 31107249 (+) True G26463
TU33459 lncRNA downstream 37585 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 939735 33789940 ~ 33794941 (+) False AMCG00007854
TU33616 lncRNA downstream 1138841 33989046 ~ 33990588 (+) True G26826
TU33615 lncRNA downstream 1141973 33992178 ~ 33993982 (+) True G26825
TU33673 lncRNA downstream 1398991 34249196 ~ 34253554 (+) True G26875
AMCG00007837 mRNA upstream 129884 32392605 ~ 32398918 (+) True AMCG00007837
AMCG00007839 mRNA upstream 172156 32325622 ~ 32356646 (+) True AMCG00007839
AMCG00007840 mRNA upstream 309130 32205006 ~ 32219672 (+) True AMCG00007840
AMCG00007838 mRNA upstream 709810 31816243 ~ 31818992 (+) True AMCG00007838
AMCG00007834 mRNA upstream 728138 31794973 ~ 31800664 (+) True AMCG00007834
AMCG00007845 mRNA downstream 499889 33350094 ~ 33357685 (+) True AMCG00007845
AMCG00007846 mRNA downstream 769098 33619303 ~ 33640336 (+) True AMCG00007846
AMCG00007847 mRNA downstream 796314 33646519 ~ 33647508 (+) True AMCG00007847
AMCG00007853 mRNA downstream 908498 33758703 ~ 33759842 (+) True AMCG00007853
AMCG00007854 mRNA downstream 913308 33763513 ~ 33790185 (+) True AMCG00007854
TU32939 other upstream 2753767 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 3525029 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 4074095 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 4434061 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 8334321 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 2760911 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 5294779 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 5318365 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 5505724 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 5581840 38432045 ~ 38436595 (+) True G27551