RNA id: AMCG00007842


Basic Information

Item Value
RNA id AMCG00007842
length 1014
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00007842
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 32528688 ~ 32804157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGAAGCAGGCAACACCTCCCAGCAACAGTTTGTGGCAGCCAGATGCATGCAAAGGCTGGCACAGGCTAAGCATGTCTTGGAACATAGTATGGCCCACTTCTTGGATGCCCCACATCACTGGGGATTTATCATTGGCCTGACAGTTGAGGCAATGTTGGAACAGTCCAACCAGATGACCACTTCAGGGGTCTTTGGCAGCAGTTCCCAGGTCACCCACACAGACCACCAGTGCACCAGAAAGATGCACAGCGTTGCACTTCAGTGCTGCACCGTTCTGGTACTAAAAGTGCATCGTGGAATGCACCGACATGCGCCACAATGCACCGTGCGCCAGCTGCCTGCGTTGAACGCAAAGCTGaaccattttgaaatgcaacTCACAGTTTGGATTGAAGTCGTGCACTTTAAACTTTCCACTCAATTCCTGCACACTCAGACTCGCAACCTGAACTGGCTGGCTGATTCCGTCTTTAAAACCCTACCGAAGATCCGCTGGGAGATGAACTGGAGCCTGGGCTCCCATTCTCTTCCCACTGCACCACAGGCATGGAACCCAGACCAGAGCAGTCTCCCTCACACATCCCTCACCCCACCTCGCCAACTTACAGctTGTAGTTTCTCACAGCACTCCTTGCTGTTTCCAAACTGCACAACCTTGCTCTATAAAAAcaccttccttccttccttccttccttccttccttccttccttcctagTCAAGGCGGCCAATGCCCAACAGGAGGGCAGTTGCCAGGTGTCCCTGTCCAGCAGTGTGGAAGATCTACCTGACCCTGATGACCAGCTGAGAGTGCCCTGCTGCTGGATGTCCTTGGCCCAATTTGTGGACCTGTCGGAGCCCACAAACCCACAGCGCAATCTGCACACAGATCAACCCTGTCATAGTGGTGAAAGTGCTGGTGTCAGTCAAACCATGGTTTCAGATGGGAGAATCAAAGATCTTGAAGTTATTGCACTGTACGATCCTTGTGACATTCATAATATGGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33438 lncRNA downstream 111188 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 705719 31822742 ~ 31822969 (-) True G26646
TU33393 lncRNA downstream 722761 31804959 ~ 31805927 (-) False AMCG00007835
TU33372 lncRNA downstream 746797 31781638 ~ 31781891 (-) True G26626
TU33340 lncRNA downstream 842256 31685771 ~ 31686432 (-) True G26598
TU33540 lncRNA upstream 788065 33592222 ~ 33640336 (-) True G26764
TU33586 lncRNA upstream 921425 33725582 ~ 33725896 (-) True G26800
TU33637 lncRNA upstream 1182390 33986547 ~ 33987991 (-) True G26847
TU33638 lncRNA upstream 1187978 33992135 ~ 33993958 (-) True G26848
TU33689 lncRNA upstream 1385339 34189496 ~ 34223231 (-) True G26883
AMCG00007843 mRNA downstream 149784 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007835 mRNA downstream 712537 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007836 mRNA downstream 731644 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007831 mRNA downstream 801249 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007824 mRNA downstream 1082625 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007844 mRNA upstream 339399 33143556 ~ 33214893 (-) True AMCG00007844
AMCG00007849 mRNA upstream 622842 33426999 ~ 33454436 (-) True AMCG00007849
AMCG00007848 mRNA upstream 698163 33502320 ~ 33507381 (-) True AMCG00007848
AMCG00007851 mRNA upstream 852124 33656281 ~ 33690820 (-) True AMCG00007851
AMCG00007850 mRNA upstream 916337 33720494 ~ 33738367 (-) True AMCG00007850
TU31949 other downstream 6897096 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 7263737 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 8260767 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 8556023 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 12055984 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 2065278 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 4435932 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 4690754 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 4763460 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 4766800 37570957 ~ 37571488 (-) True G27439

Expression Profile