RNA id: AMCG00007844


Basic Information

Item Value
RNA id AMCG00007844
length 1602
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00007844
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33143556 ~ 33214893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCTCATACCAGGGTCTAACAGCAGGTGTGCAGTGACCAGAGGTTATATCTCTGCCCTGCTGAGGCTGTACGAGGACTGGCAAAAAAATGACACTGACAACAGACACATTCCCATTCGCCAGGCCCTGCTACACTGCCTACACCATGCCACCTGCACCCCCTCTGCCAGGAGGATACTGGTTGAGGACGGAGGAATTGCCACACTATTCCAAACCACCCAGGCCTGCTTGGCTATACGGGGTCTGGATTCACTGGGGACATCTGCCTTGCAGCTTATCAGGAAGTGTTACCCCAAGTGTCCAGTCCCACTAACCTCTGATCAGAGCGTCTACAGCTTCCCGCTGCCTGGCAATCCAACCCCAGGCTTAGACACTGCACCAAGCCCTGATGatgacAGCTTTGAAGATGAAAGTGATGAAGACATTAAAAATGATGAACTGGACAAGGAAGAAGATGATGATCTAGAGACAGACTTGACCAAACTGCGCTACAAGCCAGAACCAGACCGACCCTTGGAGGAGTTGATGCAGTATGAGAGGCTCTGTCCAGAACTACATCATGACTTCCAGGAATTGGACTCAGGTTCAGAGGGAGAGGCGAGTTCGGATGATGATGGTTTGGTCTGTGGGGACTTTGGCTCTAGACCCCGATACAATGATGGTGGCAGGTCTGCAAATCAGATGTTGGGACACAGCGGGACTCCTGGTGCCTTTCATGGAAGCTGTACCTCTGCTGAGAGCCTAGAATCCTTCCAGGAAGAGACTAGAGCACCCAGCCAGGAGGGAGGTCATGGAAGTGCAGAGGCCCAGCTGAATGCCAGGGACTTTCACAGCCAGTATCTCAGCAATGGCAGAGCCAGGCAGGAGGGCCCCAGTATGGTCGACAGACTCCTGGAGAAGCATGGGGCATGTATCCCACATCACAACCCTCAGCTCTACACCACTGCTGCTGCCAACACCAAGTCCATCGCTGGGTACTCTGTCCTGGCCTTCCCAGATTTCTGGGGTCACCTTCCCCCTCCCTACAGGCAGCCGATGACAGAGCGGAAGGAGGGAATACAAAGaaagaaaatatttgaagatgtcCAGCGCTTACTGCAACCTGAGGAAGTCATTGATAAGGTTGTGTTTGATCTGGAAAATCCCAGAGGTCAGAAAGCAACCTCCTACTACACCTTGACCTTCACTATCATCTTTAAGCACAATGAAGATGTCTGTTACCTGGCCTATCACTACCCCTACACCTACTCTGCACTCCAGACCCACTTGCAGTTGCTGCAGCAATCTGTGGACCCCTGCAAAGTGTTCTTCCAGAAACAGACCCTGTGCACCTCAATGGCAGGAAACCCCTGCCCCCTTATCACCATCACCGCCTGCCCTGTCTCCCGGAGCTGGGAACATCTGCACCAGCTCCGTAACCGCCCCTGTATAGTGCTGACAGCGCGAGTTCACCCAGGGGAGAGCAATGCTAGTTGGGTGATGAAGGGGACCATGGAGTTCCTGTGCAGCAATGACCCCGTGGCTGAAAGCCTGAGAGAAACATACATCTTCAAGATTATCCCCATGCTCAATGCAGACGGGGTCATCAATGGCACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33438 lncRNA downstream 726056 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 1320587 31822742 ~ 31822969 (-) True G26646
TU33393 lncRNA downstream 1337629 31804959 ~ 31805927 (-) False AMCG00007835
TU33372 lncRNA downstream 1361665 31781638 ~ 31781891 (-) True G26626
TU33340 lncRNA downstream 1457124 31685771 ~ 31686432 (-) True G26598
TU33540 lncRNA upstream 377329 33592222 ~ 33640336 (-) True G26764
TU33586 lncRNA upstream 510689 33725582 ~ 33725896 (-) True G26800
TU33637 lncRNA upstream 771654 33986547 ~ 33987991 (-) True G26847
TU33638 lncRNA upstream 777242 33992135 ~ 33993958 (-) True G26848
TU33689 lncRNA upstream 974603 34189496 ~ 34223231 (-) True G26883
AMCG00007842 mRNA downstream 339399 32528688 ~ 32804157 (-) True AMCG00007842
AMCG00007843 mRNA downstream 764652 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007835 mRNA downstream 1327405 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007836 mRNA downstream 1346512 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007831 mRNA downstream 1416117 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007849 mRNA upstream 212106 33426999 ~ 33454436 (-) True AMCG00007849
AMCG00007848 mRNA upstream 287427 33502320 ~ 33507381 (-) True AMCG00007848
AMCG00007851 mRNA upstream 441388 33656281 ~ 33690820 (-) True AMCG00007851
AMCG00007850 mRNA upstream 505601 33720494 ~ 33738367 (-) True AMCG00007850
AMCG00007852 mRNA upstream 540963 33755856 ~ 33757020 (-) True AMCG00007852
TU31949 other downstream 7511964 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 7878605 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 8875635 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 9170891 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 12670852 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 1654542 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 4025196 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 4280018 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 4352724 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 4356064 37570957 ~ 37571488 (-) True G27439

Expression Profile