RNA id: AMCG00007849


Basic Information

Item Value
RNA id AMCG00007849
length 3309
RNA type mRNA
GC content 0.51
exon number 25
gene id AMCG00007849
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33426999 ~ 33454436 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGTCTAGAGGGCCTGTCTGCAGACCAGGGTGATATCGGGAAGGAGTCTCCTTCACAGGGTGCTTCCCCACATGACTCACGCCGCACCCCCTTGCTGGAGAGCAGTGAGAGGGGCTCACTGGTTTCTCTCACAGAGGAGGAACAGGAGTCGGACCTGGGCGAGAACAGCAGTTTGGACAGTCAGAACCCGCTAGTGTCTCTAAACTTAGGCCTGAAGTGGGCAGCGCTGGGACGAAGTCGACCAAAGAGGCGCATCTCCTTCTCCTTCAACATCTCTCCACTTCTCCCAAAATCTAAAACTGTCTTTTCTATTGGCTCTTCATCCAGTGATGAGGAGGAGTCAGACAATATAAGATCATCTTCTATCAGCACTTCCAGCTCATTGGCATACAGCATTAGTGAGGAGGATCGACCCCACAGTCCTGTAAGGAAAGAGCTAGACGGAAAGAGTGGGACGAAGGTTAGCCGCACATTCAGCTACCTCAAGAACAAGATGTACAGCAGCAAGAAGACCAAGGAAAAAGATAAAGACAAGattaaagaaaaagagaaagagaccaaggagaaggagaaagacaAGAAAACCCTGAATGGACACCTTTTCAGTACAGTCAGCTCCAGTTTGCCAGCCCAATGCTACCAATGCAACAAAACTTTCAACGCTAAGGAGGCCAGTCTCTGTGCAAACTGCAATTTACATGTCCACAAGGGCTGTAGAGAAAACCTTCCTGTGTGTGCTAAGGTCAAAATGAagCAGCAAAAGCAGCAATTTGCAGTGCCCGATGCCGTGCCTATGGCAGGTGTCACTTTACGGAATAAAACCACACTCCCGAGGGAGCGTCCGCGGTCTGCCATCTCTATCCTCCCTGACGAAACCAACCTGCTGCTGTACCACCGAAGACACACCAGTATCACACCCTTCAGCAGCAGCAAACTGTCCAAGAGCATCTCCATCAGCAACATCGCAGGCCCTGCATTTGACGAGATGCCATTGAAGATGCAGAGGTACCTGTCCCAGTCCACCGACTCCCTCCACAAGACCAACACGGTTAATGAATCCACCGAGTCCCTGACTGATGAAGGGACTGAGATGATGGACAGCCAGCTAATGGGGGAGTTTGAAATGGATGCCAAGGACCTGGAGGCCGATTCCTGGAGTCTGACTGTTGACAAGAAGCTCGTGAGCCAGCTCAAGAAGGAAATGATCAAACGGCAGGATGTCATCTATGAGCTGATCCAGACCGAGATGCACCATGTGCGGACCCTGAAGATCATGTCAGATGTGTACAGTAAGGGGCTGCAGAAGGAGGTGCAACTGGAGCAACCCATCATAGAGAAGATATTCCCCATGCTGGAAGACCTGCTGGACATTCACACACAGTTCTTCAATCGCATCCTGGAGAGGAAGCGGGAATCGGTcatagaggggaaaaaatgtggTGTCGTCATCCATAAATTAGGAGACATCCTTAACGAGCAGTTTTCGGGCCCCAATGCAGAGCGCATGAAGAAAGTGTATGGAAAATTCTGCAGCCGCCACAGCGAGGCAGTGAATAATTATAAGGAACTGCTCGCCAAAGACAAGCGCTTCCAGGCGTTCATCAAGAAAAAAATGAGCAGCTCAATCGTTAGAAGGCTAGGCATTCCTGAATGTATATTATTAGTAACACAGCGGATAACAAAATACCCTGTGCTCCTGCAGAGGATACTACAGCACACCAAAGACAGTGAGGAGGATCACACTCATCTGAAAAATGCCCTGTGGCAGGTGAAGGAGGTGATCACAGCTGTGGACAGCAAGGTCAACGAGcatgagaagaagaagaggcTAAAGGAGGTCTACAGCCGGACGGACAGCAAGTCCATCATGAGGATGAAGAATGGCCAGATGTTCGCCAGGGAGGACCTGATTCGCAGGAAGCTGCTTCATGATGGTCCGCTGCAGCTCAAGAACTCCGCAGGGAGGCTCAAAGaTGTCCAAGCACTGCTCCTTTCAGACGTCATTGTCTTGCTTCAGGAAAAAgatcaaaaatatgtatttgcttcATTGGACCAGCGCTCCACAGTGATCTCATTGCAGAAGCTGATTGTGCGGGAGATGGCAAATGAGGAGAAGGGCCTCTTCCTGATCACAGCTGGCATCGAGAAACCGGAGATGGTGGAGGTTTACACTAGCTCCAAGGATGAACGCAACACCTGGATGAAACTGATCCAGGATGCTATGCACTCCATTGAGACGGAAGAGGATAAGAAGATCTTGGAGGCAAAAACAAGAGAAATGAGAGAGCAACTGCGGGAGAAGGACAAGCAGATCATGACCCTGCTGAGGGAAAAGGTGAAGCTGTTCAAGGACATGTGTGAGTGTGGTAGGCCGGACGAGACTGCCCTCAGCACAGTGACCCGCGTGCTGTTCAGAGCCAGCACTGAGGACATGCTCAAGGGCGAGCCTCTCTTGAAGGACGCTCTGAAGGAAGTGGAGATGCTGCAGATGTTAGTCAGTGGGAGTCTAGGGGGGGCTATAGGCCAGCAGGTGTCCAGTAATCTGGAAGCGGAGGTTAGTGTCGGGCCTGTGTCACTGCCTCGCCGGGCCGAGACCTTTGGGGGCTTCGACAGTCACCAGATGAACGCTTCAAAAAatGGAGAGAAGGATGAGGGAGAGGAGTCACCAGATCTTCGGAGAACTGAATCAGATGGTGTATTAAAGAAGGGTGGGAATGCCAACCTACTGCTACTGCTGAAAAGAAATAGTGAGGTCCTCCACAGTGTCTCACGTCTTTATGAACTGCTGAGTGCATTGCAGGCAGTGGTGGTGCGGCAAGATGCCTTCATTGAGGACCAGCGGCAGGCGCCGAGTGAGCGGCCCATCTCACGGACCTTCTCGCGGCCCAACTCCCTCATCGAGCAGGAGAAGCAGCGCAGCCTGCAGAAGCATCAGGCAGCCTACGAAGAGGAGAAGAAGCGGTGGGACCGAGAGTGTGAGGCCCGCAAGAAAGAGCTGAATGACAGGGAGGCCCGGCTCAATCAGCTGGACAGCGAGAAACAACAGGGCATCAAGGAGGTGGAGCGTGACAGAGAGGAGCTAAAGGGCAGGAAGGAGGAGTACCAGAGGGACTTGGAGAGGCTGAAAAAAGCCCAGCGCCAGCTTGACAAGGACAGAGAGAATATCTGCAAGGAGCAGGAGAGGATAGACCAGATGAAACAAAAAGATCTAACCAAGTccaaggaaaagaaagagaaaaagaagaagaagaataaaggGCAGCACTCCCAACCTGCAGGTACAGTGGTGTTCACTCTCCCAGACAGC

Function

GO: NA

KEGG:

id description
K16529 ARHGEF13; A-kinase anchor protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33438 lncRNA downstream 1009499 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 1604030 31822742 ~ 31822969 (-) True G26646
TU33393 lncRNA downstream 1621072 31804959 ~ 31805927 (-) False AMCG00007835
TU33372 lncRNA downstream 1645108 31781638 ~ 31781891 (-) True G26626
TU33340 lncRNA downstream 1740567 31685771 ~ 31686432 (-) True G26598
TU33540 lncRNA upstream 137786 33592222 ~ 33640336 (-) True G26764
TU33586 lncRNA upstream 271146 33725582 ~ 33725896 (-) True G26800
TU33637 lncRNA upstream 532111 33986547 ~ 33987991 (-) True G26847
TU33638 lncRNA upstream 537699 33992135 ~ 33993958 (-) True G26848
TU33689 lncRNA upstream 735060 34189496 ~ 34223231 (-) True G26883
AMCG00007844 mRNA downstream 212106 33143556 ~ 33214893 (-) True AMCG00007844
AMCG00007842 mRNA downstream 622842 32528688 ~ 32804157 (-) True AMCG00007842
AMCG00007843 mRNA downstream 1048095 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007835 mRNA downstream 1610848 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007836 mRNA downstream 1629955 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007848 mRNA upstream 47884 33502320 ~ 33507381 (-) True AMCG00007848
AMCG00007851 mRNA upstream 201845 33656281 ~ 33690820 (-) True AMCG00007851
AMCG00007850 mRNA upstream 266058 33720494 ~ 33738367 (-) True AMCG00007850
AMCG00007852 mRNA upstream 301420 33755856 ~ 33757020 (-) True AMCG00007852
AMCG00007855 mRNA upstream 335755 33790191 ~ 33797760 (-) True AMCG00007855
TU31949 other downstream 7795407 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8162048 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9159078 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 9454334 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 12954295 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 1414999 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 3785653 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 4040475 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 4113181 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 4116521 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047536 False 12679 mRNA 0.43 38 NC_007136.7 11110380 ~ 11307786 (+)