RNA id: AMCG00007853



Basic Information


Item Value
RNA id AMCG00007853
length 1140
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00007853
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33758703 ~ 33759842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTCCTAGGAAGAAACCTCTCCACCTTGTAAGTAGATGTCGAAGGCTTCCCAAAGCTGAGCTAAATTGCTTCCCCTTCAACCTGCTGCCAGTGGAATGCCAGGTCCATGTGTTGTCATTTCTCAGCGAGGTGGACAAATGCAGCGCCGCCATGGTGTGCTGCAGCTGGAGTTGCCTGGTTCGCTCAGGGAAACTATGGAGGGTGGCAGACTTCTCACGACGGGGGGCTTTCTATTTGGGGCAGGAAGGATTGCTGGTGTCCAACCGTGAGTTTGAGCGGTGGAAGGCATGGGTCCATCACTATGCCCATCACCTTATCTCCCGCGGAGCCAGCCTGCTCACCTTGAAGGCCAGTTTCGACCTGGGAGACCATTACCACAAGTGGGGGGACTTGCTTTCTAACCTGCTGGAGAATGTCCACTGCAGAGATCTCAGCCAACTGGACCTCAACTGGACTTTCACGCTGTTGGAGCCCTTGGATCTCCGGCTTCAACCTGCCTCCAGCTCGAGCTCCAGCTCCCACCAGGAGAGTGTCACAAAGATGGACCAGGTCAATAACTTTCAGATCCTGCTCTCCAAGCTCTCACACAGCTGCCCTCGGATTGCCAGGATGCGCCTGCAGTTCGACTGGTCTGagatgtctgtctctctgctgaCACAGTTCCAGCATCTCCGTGTCCTGGAGCTCAAGTACTTCTGGGTGTTCAAAGGGGTTAGCCCCAGCTCCTTGCAGACACTGAGCAAGTCACTGCCTAACCTCAAGTCCCTAACACTTCATGTCTTGGTGCCTCTCAGAAACCTGGGCATCTCCTATACACTGGAGTCCCTCACCCTAGAGTTCCTGGATGTGTCCCAGAGTCGGGGCCTGGTCTTCTCCCGTCTCAATCTCCCTGCACTGAGGGAGTTCCGTGCGAAGAAGATCGTGCGAGGGATCACATTAGACCGTCGCACCAGGCTGAGGATACAGAGCCGTTGGCCTTGTCTGTACCATGTTCTGCGGGAAGGAACCCCAAAGCTGCAGACCTTGAACAGTGAGCGTCTGCTTCCCAACTGGAAGGAGCAGAGTTATCAGGAACTGACCTCTATCCTTCAGCAGTCCTGCTACTGTGTCCTGCACTTGGACAGCTGGCTGTGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33459 lncRNA upstream 870663 32887790 ~ 32888040 (+) True G26704
TU33452 lncRNA upstream 1136173 32622260 ~ 32622530 (+) True G26698
TU33398 lncRNA upstream 1935730 31822740 ~ 31822973 (+) True G26645
TU33371 lncRNA upstream 1976812 31781638 ~ 31781891 (+) True G26625
TU33260 lncRNA upstream 2334012 31414154 ~ 31424691 (+) False AMCG00007827
TU33593 lncRNA downstream 30098 33789940 ~ 33794941 (+) False AMCG00007854
TU33616 lncRNA downstream 229204 33989046 ~ 33990588 (+) True G26826
TU33615 lncRNA downstream 232336 33992178 ~ 33993982 (+) True G26825
TU33673 lncRNA downstream 489354 34249196 ~ 34253554 (+) True G26875
TU33671 lncRNA downstream 489379 34249221 ~ 34253554 (+) False G26875
AMCG00007847 mRNA upstream 111195 33646519 ~ 33647508 (+) True AMCG00007847
AMCG00007846 mRNA upstream 118367 33619303 ~ 33640336 (+) True AMCG00007846
AMCG00007845 mRNA upstream 401018 33350094 ~ 33357685 (+) True AMCG00007845
AMCG00007841 mRNA upstream 908498 32528802 ~ 32850205 (+) True AMCG00007841
AMCG00007837 mRNA upstream 1359785 32392605 ~ 32398918 (+) True AMCG00007837
AMCG00007854 mRNA downstream 3671 33763513 ~ 33790185 (+) True AMCG00007854
AMCG00007857 mRNA downstream 107121 33866963 ~ 33870738 (+) True AMCG00007857
AMCG00007858 mRNA downstream 180560 33940402 ~ 33984780 (+) True AMCG00007858
AMCG00007860 mRNA downstream 241195 34001037 ~ 34010551 (+) True AMCG00007860
AMCG00007863 mRNA downstream 284770 34044612 ~ 34052190 (+) True AMCG00007863
TU32939 other upstream 3983668 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 4754930 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 5303996 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 5663962 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 9564222 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 1851274 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 4385142 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 4408728 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 4596087 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 4672203 38432045 ~ 38436595 (+) True G27551

Expression Profile