RNA id: AMCG00007854


Basic Information

Item Value
RNA id AMCG00007854
length 5085
RNA type mRNA
GC content 0.40
exon number 20
gene id AMCG00007854
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33763513 ~ 33794941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGACCTAACATCCCACAATCCGTCAGGTCTGGAGCTTTTGTGAAAGCGTCAGATGGACGTGAAGCACTGCCAGAAGCCATAAGAGACTGCCTGGACTTTAGCGGTGAAAAGACTCAGCAGGACTACAAAAGAACAAGAGAAGTGCTTTCCTCTCCTTCCTTCCAAAAAGGAAAACTTTACATTGCAGGAGGGGTCTCTTTTTAGACTTGAAAATGATTGTCATCTCCAGCTATCTCTGAAACACAGAACGTGTGAGGGAGCTGGGGAGCAGGTTGGTGGGGGGCTTCACTTTGAACTTCACCTCATCCAGGGTTGgtggtgaaaaaacaaaaaggaaaaaaaaatgcttccaGATGTAAGAAAGTTgataaactgatttaatttaagtgAGCGTCAACCctgattttttcttcttaactCAGCCTTCAACGGTTAATGCTTAATCTATTAacaattagtgtgtgtgtgtgtgtgcatgtgcatgtgcttgcatgtgtgtgtgtgtgcgcatttaTGGGAGGTGAACAGAAGAATGCCTTGTTGCAGTGTCAGTTAAAAGCTAGTGGAGCAGCCGAGCACCGCTCCTATCCAGGGATTGTCTCCAAAAGGAAGAGGACATGGCTAAAGGCTTCTACATCTCCAAGATTTTGGCAGGAGCCACCTTACTGCTCACAGTGGCCGCCGTGTCCTCCATCATCGCAATGGTGGCGGTCTACTCTCACCAAATTTCAGTCAATCCACCTACACGGCCCAGCATACCATCGTCCACTGTGACACCAACTAAACCAGGAAAGAGTGTAAGACTGCCTGACACCTTGATTCCATTGAGCTACAAGGTGACGCTTCAACCTCACTTGTCTCCAGACGCCAACAGCACATTCCACTTCACTGGAAACTCCACTGTGATATTCAAGTGCCTCAAGCGGACCCGCTACATCACCATCCACAGCACCAAGCTGAACCTGACCCGGACTGGCAGTCACTTGGCCACGTTTAAAGCACACAACAGCACCGAAAAGACAAGCATTAGAAGGAGCTGGCATGAAAACGAGAATGACTTCTTGATGATAGAGCTGGATGTAGAACTGGTGGTTGGCCGTACCTACGAGCTGTCCACCAAGTTTTGGGCCAACCTGGATGATGACTTATCAGGCTTCTATCtgagtaaatacaaacataatggAACTGAAAAATTCATTGCCACAACCCAGATGCAACCCACAGATGCAAGGAAAGTATTCCCCTGCTTTGATGAACCAGCTATGAAAGCTGTGTTCAATATCACTATCATCCACCTGAAAGGGACCAAGGCTCTGTTCAACTCAGAGTTCAAATCTGGTACACAACAGATGATCGATGGGAAAATGTGGGAAATCACAGAGTTTATCTCAACCAAACCAATGTCAACTTACCTCCTAGCAATTGTGGTCTGTGAATTTGAGAAAATCTCAAGTAAAACCATAACAAAAGATGTGAATAGCAAGAAAACCATAGTTAATATCTGGGCTCGACCTGAAGCAATTAACGACGGACATGCTGATTATGCTTTAAGTATTACCGGAAGAATCCTGGAGTTCTTTGAAAAGTATTATGATACATCATATCCTTTGCTTAAACTAGACCAGGTTGCTCTACCAGACTTCAGTGCAGGCGCTATGGAAAACTGGGGTTTAATTACTTATCGAGAGACGGCTCTTCTGTATGAACAAAATGTCTCCTCCACCAGCAATAAAGAATGGATTGCCACAGTGATTGCACACGAACTGGCCCATCAGTGGTTTGGAAACCTGGTCACAATGAAGTGGTGGAATGATCTGTGGCTGAACGAAGGCTTCGCAACTTACGCCTCCTATCTCGGAGCACACCACGTTGAGGACCAATGGAATATTAAAGATCTAATAGTGTTAAATCAAATCCAAAGCGTATTCCAGGTGGATTCTCTAGCATCCTCTCACCCCCTCAGCTGCAAAGAACAGGATGTTAATACGCCGGATGAAATCAGAGAGCTCTTTGACACCATTACCTACAGCAAGGGGGCTGCAGTGTTGAGGATGCTGTCAGATTTATTAACAGAAGAAGTCTTCACTGAAGGGCTGAAGACATACCTGAAGAAATATGAGTTCAATAATACAGTTAACATTGACCTTTGGGAACAACTGCAGGAGGCTGCAGAGAAAAACTATTTACAATTCCAAGTCGGAGAAATCATGAACACCTGGACCCAACAGATGGGCTACCCCCTCATAACTATCAACACCACCAGTGGATACACCACACAGAAACACTTCCTTCTGAATCCCAATGCTCAAGTTAACCAGTCATCTGAATACAACTATGTTTGGCATGTTCCAATAAGAGCAATgaaatctggaaaaaatgaagagctACAAATGGTTGTTAAAAAAGACgCGGGGTCTATACCAGCATTTCAATCAAACGGCAAAGAGTGGATTCTGGCAAACATCAATTGCACTGGATATTTCAGAGTTAACTACGACCTAGGAAACTGGAACAGACTGCTAAAACAGCTGGAGAGCAATCATTCAGTAATACCAATCATAAACAGAGCACAGCTTATTGATGATGCCTTTAATCTCGCAAGaGCAAACTATGTCAATACCACACTTGCACTGGACACCACAAGGTTCCTCTTTAATGACACAGAGTACATCCCCTGGCAATCTGCTTTGAATAATCTGGATTATTTCTACCTAATGTTTGATCGTTCAGAAGTTTATGGACCAATGCAGGTATATCTAAGGAAGCAGGTTGGGCCCTTGTttaattactttgaaaacaTCACAGCTAACTGGACAGAGGTGCCTAATGGTCTCACTGACCAATATAACCAGATTAATGCTATCTCAGTGGCATGCAGCAATGGTGTACCTGAGTGCCAGGAAATGGCCTCTACTTTCTTCAAAGAGTGGATGGAAAACCCCAGCTCTAACCCGATTCAACCGAACCTGAAAACCGCCATTTACTGCAGCGCTATCGCCACCGGAGGAGAGGAAGAATGGAACTTTGCTTGGGAGATGTTTCAGAACGCCACGGTGGCCACAGAGAAAGACAAGCTGCGATTCGCCCTGTCCTGCTCCAAGAAAATCTGGATTTTGAACAGATACCTCGAATATTCCCTGGACCCGGATAAGATCAGGAAGATGGATGCCACTTCAACAATCACTTACATCGCAGCTAACGTTGTGGGACAATCATTAGCCTGGGACTTTGTCCGAGAAAAATGgacatacatatacaaagaGTATGGAAGTGGAATAATGTCTTTCAGCACCATCATCGATGCACTGACCCAGAGATTCTCCTCAGAATTTGAGTTCAAACAGCTGGAGCAGTTCAAGAAGGAACATGAAAAGATGGGTTTTGGGTCGGCCACTCGAGTGCTGGAGCAGGCCTTGGAGAGAACCAAGTTAAACATCAATTGggtacaggaaaacaaaaagtctgTGCTCAACTGGTTTAAGAAAGAGTCTATAGTATATTAAATTACACAGGTTACACAACAACACCATTTTAGCAAGAGCACTGCATTCCCGGCAATGAAAAACAGATGAAGTAGAcatgctattttgttttttaagttttcactCAGTGCAGCTTGGCCTCTTGAAAACTCTATTTAgattatttgctatttagtatgcTGATTTATTGTAGGTTAAGTTAAACTGATTAATTCTGTAAGAAATGAGGGAGAAGTGCAATTATACTGTGGTTTTACTTCAGGCATCTCCAGTGATTGTCAATTATCTTAAAAACGTATATATTCTGGGTAAACAAACTGACTTGCTACCATTCTATAAAACAGACATTATTTAAACCATTTGATTGACATTAACATTCTACAGACAACACAAAATGATGCCTTGTTTTTATAAAGATTCTTtccaaatatgcattttaaacaataatatttcTTGTAATCCctattttgtatgtgtaaataAGTTCTACAAAATGTGgctcatatttaaataaatatatgataataAGGAATGTTAAACAACTGCCAACTGTGTATTATTGTATGTTGTGTATTCAGAGCCTTCATACTGCAGCACTTTAAAAGAGTGGTACTATCATGGCTGTGTTTAAGCATTGCTTAAAGCTGCTTTCTCAAGTCAGCCAATAGACCTGTAAAATAAGCTGTTCTGTTCTTGTTGGCTAGGGCGGctgttataatatttgtatcttTAATCATAGAAGTCAATAGGAACCTcaaaaatgcaaacacatgttCCAGGCTAGAGGATTAATTACTTTCAAACAATATTCTTAGGAGAATTCATGTTATCCCAAgacaaaaaagcacaaaatgagTACTTTATCCAGCGATTCACACATATTAAATTTCACAAATGCAGACATACCACAATATTGTGGTCTGTTCCACTGCAAAAATAGAACACCCCCAAacctcacttttttttttacttcagctGCAATATGATTCAAATCTGAGATGGAGGACAAGAGCATTGATCCACTCAAAAACTATACACAAactatcttaaaaaaataacccaggagaactgtttttaatattattattattattattattattattattattattattctatttcaTTCTAACAAGTATTGCTACTGCTGTTGTTTCACATTGGCAGATTGCAGAACATAAAAGCAggacaaaatgtaattgattttataCGCGATTGTTAAGCTgtgtaaaatacaaacacatacatatgtatatgtgtgtgcgcctgtgtgtgtgcaacaatgataacaataacacaatacatacataataaaataactgaaaacaaggcagatatgtatttatttattgtttatttatgagtttaattttctttatggACAAGTTTGAAATCTATgtaaaacatgagaaaaaaatatataagaccAAAACAAggtcaattaattttaaagctgtaatagctaataaaaggaaaagtcaCTTCTACTGCAATCTCAATCTGAGACAAATTCGTTTATGGTTTTCCTCGAAAGTATGTTTGATAtcaaaagacagaaaatatctctactataataataataataataataataataata

Function

GO: NA

KEGG:

id description
K11140 ANPEP, CD13; aminopeptidase N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33459 lncRNA upstream 875473 32887790 ~ 32888040 (+) True G26704
TU33452 lncRNA upstream 1140983 32622260 ~ 32622530 (+) True G26698
TU33398 lncRNA upstream 1940540 31822740 ~ 31822973 (+) True G26645
TU33371 lncRNA upstream 1981622 31781638 ~ 31781891 (+) True G26625
TU33260 lncRNA upstream 2338822 31414154 ~ 31424691 (+) False AMCG00007827
TU33616 lncRNA downstream 198861 33989046 ~ 33990588 (+) True G26826
TU33615 lncRNA downstream 201993 33992178 ~ 33993982 (+) True G26825
TU33673 lncRNA downstream 459011 34249196 ~ 34253554 (+) True G26875
TU33671 lncRNA downstream 459036 34249221 ~ 34253554 (+) False G26875
TU33704 lncRNA downstream 475936 34266121 ~ 34266418 (+) True G26895
AMCG00007853 mRNA upstream 3671 33758703 ~ 33759842 (+) True AMCG00007853
AMCG00007847 mRNA upstream 116005 33646519 ~ 33647508 (+) True AMCG00007847
AMCG00007846 mRNA upstream 123177 33619303 ~ 33640336 (+) True AMCG00007846
AMCG00007845 mRNA upstream 405828 33350094 ~ 33357685 (+) True AMCG00007845
AMCG00007841 mRNA upstream 913308 32528802 ~ 32850205 (+) True AMCG00007841
AMCG00007857 mRNA downstream 76778 33866963 ~ 33870738 (+) True AMCG00007857
AMCG00007858 mRNA downstream 150217 33940402 ~ 33984780 (+) True AMCG00007858
AMCG00007860 mRNA downstream 210852 34001037 ~ 34010551 (+) True AMCG00007860
AMCG00007863 mRNA downstream 254427 34044612 ~ 34052190 (+) True AMCG00007863
AMCG00007864 mRNA downstream 274946 34065131 ~ 34083321 (+) True AMCG00007864
TU32939 other upstream 3988478 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 4759740 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 5308806 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 5668772 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 9569032 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 1820931 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 4354799 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 4378385 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 4565744 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 4641860 38432045 ~ 38436595 (+) True G27551

Expression Profile