RNA id: AMCG00007856


Basic Information

Item Value
RNA id AMCG00007856
length 1146
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00007856
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33800570 ~ 33813933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGGAAGCAGAAACAGAGCCCCGTTTTCAGGAGCAGTGAGCGACGAGGAGGGGGCTTTGTGAGAATCAGCACTCTGCTGGAGGAAGGCCTGTTCCCAGTAGGTGGATCAATCACCAAAGTGAAGCTGCTGAAGGCCAGAGTTGACAGCGGAGTGACTGTAGACCTGGAGACGGAGGGGGTCCCGGTTGTGGCATCACTCCTGAAGCTCTACCTGAAAGATCTCCCAACAGCTCTCATCCTGGATTACACAGGGCAATGGGGAGACTATCCTGTGGATATTCTGTGTGATGTGAGCTATGAAACCTTGAAGAAATCCTCAGATGATTGCTTGTCTCATCTGCAGTCAACCAGCGCATGTGTGACGAGCTGGTTTGTGCCTCCTGACAGTGCAAAGGTGAAGATTAAAATCTCGAATGTGGCTCGTTTTTCTCTGTTTGGTGATGACGACCCAGCCCACACAGTACTGGCGCTTGTACAGCCAGGGGAGGAGACCCAATtgCTCGCCCTGTATCTGGATGGAAGATGGTGGTCTGTGGCCGATGTGATGAAGACCTCAAACCCCTCAAGAGTGGGGCTGGTCACGGTGCAGTCTGTTGGAGAGAGGGTGGTGCTGTTCCTCCTCAGTCAGTTTATTTTTGGGATCCTGGAGAGGCCTCTAGAATCAGAGCTGGCCTTCTCCCTACACCCTGCCGGGGAGCTCGGAAAAATCACATGGAGCAACGGAGAGGCAGTTGGATTTTACACAGTGAAGCGGAAAGGCAGCCTGTGTGACAGCTTCACCAGTCAGTCCTACAAACTCCCTGTACTGGACACTCTGTTTGTGAGGAGACATTGGAGGCGGAGGGGGTTTGCTCTGGAGATGTTAGAAGACTTCTGTAGTTCCTTCGGGAAAGAGGAGGCCCTAGGGATCAGCAATCCAATATCTCCCAGCATGTATGAAGTGTGCAGGAAATACCTTCTGACCCACCAAAAACAGAGGGATCGTCTGTATGAGGTGGAGGCCCCTGGTGGCTGGGGTGAGAGACGCAGCGTGTGGTTACAAATACAGCTCAGCCACATCCCGAAAAACAGTAAAGAACAGGCTTTGAGTTTAGAAGTGTCCAAAGGAGAAGTAAATGCCACAGAAGATCTGAAGGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33586 lncRNA downstream 74674 33725582 ~ 33725896 (-) True G26800
TU33540 lncRNA downstream 160234 33592222 ~ 33640336 (-) True G26764
TU33438 lncRNA downstream 1383070 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 1977601 31822742 ~ 31822969 (-) True G26646
TU33393 lncRNA downstream 1994643 31804959 ~ 31805927 (-) False AMCG00007835
TU33637 lncRNA upstream 172614 33986547 ~ 33987991 (-) True G26847
TU33638 lncRNA upstream 178202 33992135 ~ 33993958 (-) True G26848
TU33689 lncRNA upstream 375563 34189496 ~ 34223231 (-) True G26883
TU33700 lncRNA upstream 435266 34249199 ~ 34253565 (-) True G26893
TU33753 lncRNA upstream 982236 34796169 ~ 34796853 (-) True G26943
AMCG00007855 mRNA downstream 2810 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007852 mRNA downstream 43550 33755856 ~ 33757020 (-) True AMCG00007852
AMCG00007850 mRNA downstream 62203 33720494 ~ 33738367 (-) True AMCG00007850
AMCG00007851 mRNA downstream 109750 33656281 ~ 33690820 (-) True AMCG00007851
AMCG00007848 mRNA downstream 293189 33502320 ~ 33507381 (-) True AMCG00007848
AMCG00007859 mRNA upstream 108542 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007862 mRNA upstream 181779 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007861 mRNA upstream 197177 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007869 mRNA upstream 982962 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007874 mRNA upstream 1742317 35556250 ~ 35594137 (-) True AMCG00007874
TU31949 other downstream 8168978 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8535619 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9532649 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 9827905 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 13327866 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 1055502 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 3426156 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 3680978 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 3753684 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 3757024 37570957 ~ 37571488 (-) True G27439

Expression Profile