RNA id: AMCG00007860


Basic Information

Item Value
RNA id AMCG00007860
length 3585
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00007860
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34001037 ~ 34010551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCAGTTTAGGAGAACCTTTGAGACCGAGAAGCTGCAGCTTCAAGAGCTCAATAAGAGGCTCAGTCAGTATCTGTCCAGGGTGAAGCAACTGGAGCAAGAAAATGCCTTCCTCATCACGGAGATCAGGACCATCCGGCAGCAGAGGACGGTGGAGGGGGAACATCAGCACATGGCCGAGCTCCGGGAGCTGAGGAAGACGGTGGGGCAGCTGGCTTTGGAGAAGTCCAGAGCCGAGATGGAGCGGGAGAAGCTCTGGCGAGAGTTCCAGCTGGTCCAGGCGCTTTGCTGTGAAGAGTCCGGGGTCTGCAAAGACATCCATGGGGACATGCAAGGGTGCGAGAGGGACTTAAACCAAGCCCTGAAGAAAAACGCCGCACTGGAAGAGCGCTTGTTTCAGCTACAGGATGAGTACAAGTCCCTGGAGGACATCCACAGGCGCGACATGGTCCATCTCCGAGAGCAGGTCCACTGCAGCGCCTTGCCTGTCTTCACCCAGAAGTACCAGGGCCCCCCAGCGCTCACCATGGAAGAAGTGGAGGAATACGCGCTCACCCTGTCCGAGTCCTGGATGGAGACGTTTGACGTGTACCGCAAGAGGGTGGAGGACCTGGAGGAGTCCATCCGGCTGGACGAGAGGAGACTGGAGGATCTGCGCCGGGAGAAGATGCAGTGCGCCTCCGAGTTTGAGAAGCTGCGGGCGGAGGCGGACAGGCAGGGCCAGCTGCAGATCCAGCTGGAGGACGAGCTCATTCACCTGCAGGACAACTTCGTCGTGCAGCTCGACCAGTACCAGGTGACCATtgagcagctggaggaggagcgcAAGGCGTTGGCCGCTGTTATTGCAGAGAAACTGAAAGACCACCAGGAGCTCATGCAGGTTAAGATGGGTCTCAGCTTGGAGGTTGCTGCCTACAGGGCACTgctggaaggagagagaagagatcTTTGGACAGATCAGTCCATCAGGGAAGCCCAAAGAACAACAGataTGAGGAAGCCAgttcacacatacacagcaaAGCAGTTTGTGAGCAGGCAAGATGGAAGGAAACAGTATCCAATCACCCCTCGTCCTGAAGTCAGATATAAGGAGCAGGCACCAATTGTGAATACAGCCTCCAGGTCAAGTCAGTTTAGAAGTTACGGAGTCACAGAATCTGTCCCAGTAAGTGTTTCCAGTCGAGTTCTGCAAAGTTCCACAGCCAGAAGAGACATTCCCTCTTTTGTCAAAGCCTCACAGATCTCCACTGCTTCCAAGACTGATCTCCCTCAAAGAAAGAGCACAGAAATCCAAAAGAAAATCATAGAAGAACAAACTGtgaacacaaaaaatgtagCAAATGCAACTGTTAACCTTCAGGGTTTGGCCAGTGCCTCCAGGACTAGCTCTGGGCTTTCACCCACAGCAGACAAGAAGTCCACAGTGGAAGAGATCCAGCGAAGAATGGTGAAAGTTACATCACCTAGTAAGATACAGGAAGAGAGCAGAGGGAATGTCAAAGACATCAAAATTGTTACTATAAAGTCTAAAGAAGAAAGTGAGAAATCACACGTCTTCCCTGTGAAAATGGCACCAGCTGTAGACAGTGGAGAAGTAAAGGTAACATTGCAGGGCCTTCAAAACCTCACAGGCGTCAAGAAAGCGGGCTTTGCAGAGGAAGAATTGCAAGGGCAAGTTTCAGATAAATACACTTGGGAATCAGAGATTAAACCTCACAAGGATGTTAAGCAGACAGTTCCAGAATACCAGCAGGACATGAAGAATGCAACCATTGAAGAAAGGATATTAGATACGATATCCATGCAAGAAATCCTTGACAAGGTGGTGAAACCAGCTGGTTTGGAAACAATGCTCAGCTCCTCCCCTGACTCCAAGATCACTTACCATATTGAGAAAATAAAGGGAGGAGATGGAAAAATGAAGACTGAGATTGTCCTGGAGTCTAAAGTACAGGAGAATTTGGACATCTCAGATGATTCAGTCCTGGATGAACTTCTCAACAAGGGGGTCAAGAAAGTTGCTTTGGAAGACATTAAGGGAACCCCAACCGGAAGCATGATTGAGAACCTTCTCAGTCTTGGCCTGAAGGAAGGAGAGAACCTGGAGAACAAGGCGGTCAATGTGGAGATCATTGAGGAACCCCTGGAGGCTCACAGTGATGAGGAAAATGAAGAGAATCCCCCACCTCAGTTCTCTAAGCCCTCATCAATGTTCTTCCAGATTGAAGAGTTGGAGAATGCTCCTCAGGCGGCCAAACCATTGGAGATCAGCACCGAATCCACAAAAGTCTCCATGCCCACTGGAGAATACAGGAAGGTTAAGCAATTTCAGCAAGGTGCCACTGACCTGAATTCTCCATTCATCACTCAGGTCCAAGAAACTGAGTATTTCGTCTCCACACCTGATGATAATCTTTCAGAGCACGAGGAGAGCGGATTTGCATCTTACGAGCAGTACGCAGTGGCCCATGACATATCTGCGGAGGACAGGTACTGGCAGGAGGAGCCAATGTCTAGCCATGGCCAAAGCTTTGCAGATGAAGACATTTACAGAACCACACATGTACATACAAGCATGAGAACAACTGGTGGTGAACACAGATTGGCCAGGGACAGTTTCCCTGAGTGTATCATAGAAGAAGAAGTTGAAGTCCCCCATGGAGTTCAGGAGTCGGTGCTCGAAATCTTGAAAGAGGATGCAGTGGATCCCAAGCAGCAGCTGAAAGGGGCTTTGGATCATCTCCAGGGTAAAATGTCGGACAATTTAAAAGAAGAATTTGAGATTTTGAACAGAAACGGTCAGGAGGGTTCTGACAACGTGGCAGTCGACATCAGAAAAGTGCAGCAGTCTTCAGACAGCGGCTTGGTCACCATTGttgcagaaatcaatgttcCCCAAAATCTAGAAGATTCGGGACTGTGGGAAAAACAGAATGTTGAGTCTTCTGAGGAGCAGATCATGTCAGGGCGACAGTTCGCCAATCCAGAAATGCACCCAGGAATCAGAGGCAAGGGAGGAGAAAAGAGTCTTTTCTCCTATGGGGATGATGACAGAGAGTTTACAGTTAAAGTCGGTAGAAATCAAGATGTGAGAGTGCAAGGTATGTCTTGGGTGTCTGAGAGCGAGGAACCAGAAAGCACCAGCACAGGGGAGTCAGTGAATGAAGTcaacaaaacagtcaaacaCATTAAACTAAGTCCTACTGAAAAGTCGTTCACTTTTCAGATGGATGTCACCAAGGTTACGTCGACAGCCACTAGCAGTGGCCCCCATGAAGCGCAAGTGTTCTACTCACAGGCTGAGCTCACTGAGGGAGCCAATGACAGGGAAGTGAGAGAGGGTGTCTACAGCTATGTGCAGAGGGTGACGGGAAGTGATGACGAGGGCCAAGTGATTTCCTTTGGCAATGAGAGGGAGGAACAGATGGAGATGTGGAATCCCAGCAAAGACCATACAGCTGAGCAGCATGCCTTTACCAGAGTGGTACAGACCCAAAGAATAGTGGATCCCCGTTCAGTGATAAGTGAGGAAAGGAAAATTGCAGCTATTTACCTTGACAGCACTGAGGAAGATTAG

Function

GO: NA

KEGG:

id description
K10376 DMN; desmuslin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33615 lncRNA upstream 7055 33992178 ~ 33993982 (+) True G26825
TU33616 lncRNA upstream 10449 33989046 ~ 33990588 (+) True G26826
TU33593 lncRNA upstream 206096 33789940 ~ 33794941 (+) False AMCG00007854
TU33459 lncRNA upstream 1112997 32887790 ~ 32888040 (+) True G26704
TU33452 lncRNA upstream 1378507 32622260 ~ 32622530 (+) True G26698
TU33673 lncRNA downstream 238645 34249196 ~ 34253554 (+) True G26875
TU33671 lncRNA downstream 238670 34249221 ~ 34253554 (+) False G26875
TU33704 lncRNA downstream 255570 34266121 ~ 34266418 (+) True G26895
TU33733 lncRNA downstream 615411 34625962 ~ 34626229 (+) True G26923
TU33743 lncRNA downstream 780205 34790756 ~ 34793855 (+) True G26933
AMCG00007858 mRNA upstream 16257 33940402 ~ 33984780 (+) True AMCG00007858
AMCG00007857 mRNA upstream 130299 33866963 ~ 33870738 (+) True AMCG00007857
AMCG00007854 mRNA upstream 210852 33763513 ~ 33790185 (+) True AMCG00007854
AMCG00007853 mRNA upstream 241195 33758703 ~ 33759842 (+) True AMCG00007853
AMCG00007847 mRNA upstream 353529 33646519 ~ 33647508 (+) True AMCG00007847
AMCG00007863 mRNA downstream 34061 34044612 ~ 34052190 (+) True AMCG00007863
AMCG00007864 mRNA downstream 54580 34065131 ~ 34083321 (+) True AMCG00007864
AMCG00007865 mRNA downstream 212348 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007866 mRNA downstream 230285 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007868 mRNA downstream 261212 34271763 ~ 34325416 (+) True AMCG00007868
TU32939 other upstream 4226002 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 4997264 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 5546330 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 5906296 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 9806556 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 1600565 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 4134433 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 4158019 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 4345378 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 4421494 38432045 ~ 38436595 (+) True G27551

Expression Profile