RNA id: AMCG00007861


Basic Information

Item Value
RNA id AMCG00007861
length 4655
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00007861
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34011110 ~ 34042896 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCACTGTCGAAGGAGCATCCAGCCCTGAAGGCAGTAGCCACAGCACTGTTAGCTCTGAAGGCCCCTGATCTTCTGCCTCCACTGGACGAGGCAGAGGGGATCCGCAGAGGGCACGATGCTGCCATCCAAGAACTGGCACGCTGCGTGGCCCTAACCCGGCTTGTTTATGGAGATGGCCACTGGAGACTGGCAGAAGCACATGCCAGGCTGGCTCAGGGATACCTGCAGCTGAAAGGACTGGCATTGCAAGCCCAGGAGCACACAGAGAAGGCCAGGACGGTCGCTGTCTCCAGCCCATTAGGTCCCCCAGATGGTGCAGAGAAACAGGGACTGCTGAAGTGTCTCATCACTATCTTCCACACGAAAGGAGGGGCTGCCCAACAGCTGGGCAAATATCCTTTTATCCCCCCAAGATTCCTCTGTCTAACAGAGATAAAGGGAACAGTGGCTATAGATGTTTCCTTAACACTGAGCACTCTGAAGGATGCTGAGCATTGCctggagagagcagagaggatTGTGGGGGAGCTTCAGAAGCTGGAAGGAGTGAGCAGGGAAGAAACGGCCAGTGCCGAGTGTGACATCGCCATGAGCTTTGCCAGgctgTACCAGAAGCAGGGGCAGTGGGCAGAGGCGCTGTGCCAGTGCGAGAGGGCCCTGAGGGTGGCAGAGGACAGGGCGGCCTGCTCAGCTCATTCCATGGCGCTGAGTCAGTGTCCGGCGGGGGGGCTGGAGGGGGCACACATTGCTCACAGCTTGGCTCTGGCCTACTCCACCGCTGGGGAGCCTGGGTACAATGacagtgcagtgcagttcttTGAGGAGAGTCTAAGTGGCTATCGGAGCTCCCTAAAACCCCAGGATCCCACAGTCCTCTCAGTGCAGGACGACTACTGCCGCTATCTCATCCTCTCTGGGAACCAAGAGAGAGCTGTTACCCTGCTGAAGGAATCTCTGCCCCTGAAAAAAGTGACATTTGGAGAGCTTAGTGTAGAGGTGGCAGAGACGTACCAGATCCTTGGAGGGGTGGAGATGGCCCAGTGTCACGTCAGGAGAGCCTACAAAACATTGAAGAAGtgCCTGGAGATTCAGAGCCTTCTGTTGGGCCCCCAGCACAGAAAGACCAGGAGCACACAGCGCACCGTGGACAAGCTGGCCAGGGCTCTGGAGGTTGGTGGGAGACGGCAGAACACAGGCAGTTTGAGAGACAGGCCTCCTTTTTGTGCTGTTGTGCCTTCCCATACTGAACTGGGAGGAGCAAAAGTCACTGATCATGGCTTGGACTAGCACAAGGGGAAGTTCTACACAAAttacaataagtaaatgtgtCCTTTAAATGGAAAAGTGATTGAGAATGGGAGAGCTGTATTTTACTAGGCTCTCGGAAGGTACATTTTTCTTCAGTACAGAGTTAAAATGAtcacatgtatatttttctaatatCTTCTTCTGAggtgtgtattttgttaatgaaCATGTCTGCTCCAATCTGACCACAAAGGGAGTTGGGTAATTTGGTTCTAATCTGGACATTGGATGCACAGCTCCACGCAGTGAAAGGGCATCACGTTTTCATGACTACTTCAAACAACTAATGGATCTGCATTTCCACTCTGCTATTAAAGACAATATCAAGTTCAAGACTCATTTGGAGGAGTGCCTTGAAAACTGCATGGAGTTTTGCACGTCTTCACCTGGACCCcataacaaaacaagaaaggcAACTTCTGAGTGATTGTGGACAAAACGCATTGGGCACTCTATTGCAATGTTCTCAGTAAAGCATCTAATTAATTTGCAGGAGGAAAACGTGACCATAGTTAAACTTGAAAACTTTAAATATGGCATTAAAAGAGCTGAGAAGAGGTATGTTGGGAAATCTAACAGCACTACAGGGTGAactgaaatattgtttcaatgGACTGAGGcataacagaacaaaacagaacttCACTATAAGAACAACACAGACTCGGGAGCAAGCTTTcatgacttgtttttttattattttttaacactaaTTTGTGCAAAGACAATTGTGTAAAATGCCAAGCTGccaaatatatgaaaatgttttcaatttgctTAATGAAGAAATTAAACGGATGCAAAAGCCTTTTTTTCATTGAAAACCTAGCCTCCCTCTTCCAGTGTACACGAGATAGTAATCTGCCAGATACAGAGCCAGAATCCGGGGGTGGGGCGCAGGGGGATAATTTGGTTCACAAGCcaacccctccctcccccttgTAAAATGTCTCTAAACAGAGCTTAACTATTCCTGTTGAACAATTTTAAATCAACCCTTGATAAGATTTCACCTTGGACTGCACTGATAAAAATAGGCTAGTATCTGCAGTTAATACCAGTTACACTGTTTCAGAGACTCACTGCAAAGTTATTTGCATTGCAAGAGATATTTGTTAACCATACTACTAGTGCTGCAGGACTACAGGACTCAGTTAAGGTGTTTGAGATCACCAGCTGAGCTGTCATTTCCCAGTGTGTTCAAAAGGACCACAGCATTAAAAGGGGACCTGCTACACAGTGagtgttgttaatgttatttaacaaCAGGAATGGCTAATACAGGTAGTGTGTAAACTAATGCAATGAGGGAAAACTCCCTGAATGCAAATGTGTGTCCTGTAGTGTATAAACCACACTGGTGCATGAAAAGGAAGTAATGTTAATATTCACACAATAATTCGACTTTTAATTCATGTTGTTCAAGCCTGTATTCTTGGGGGGATGTTTTTGCAGGACATGCACAAACTAGGCAGTACTCATCCGAGCGTTCTCACTTGAGGTGCACagtcaaaagaaagaaatcagtCCAATCTAAATAATTCAATACTGTTAATACTTTTTCTAGGAACAGCAGTTGCCATTTTGTCTGCGGACTGATGATTCAAACTTCCAGTATCAATTCCACCTGTGTAAAATACCGATGCAGTTTCTTTGGCAGATTGCACACAGCTCTTGAGGAATCCTGTGCTGCAAGTCCGATTTACAGACTAGGAACTGCACATGACAAGAAGTAGTGAGAGAATAATGAAAAGGTGCTGATGAAGCTATACTTACACAATATTTGCaactttaaatgcatctgaTGAGGTCACATTCATTACATTcagcatgtgtgtttgtataacTATTgcaaacagcacagcactactttgtttcttttcagaatTCCAactaatttttaatttgtgcatttgCGGTTAAAAAAAGCACCCAATTCTGTTCTCCTGTGTAACTCGGATTTTGTAGTCCATACAACCCTTTAATTTAATGGAATAAATTCaatgtcaatttatttatttagctggtTTCCAGAGACTACAAACCAGGCTTCAAAAGCAGTAGggcacactttacaataatagGCACCGTTTCTTAATGAATTgctgtatgaataccacaggaataacacattaatCAATTTTGCACTTCATGCGTTTTGCCGATAAGCtcatgtataacaaggttagggtcagggttaggaAAAGGGTTACAGACTCAGTTTGGGGTTTGGGCTTATACAAGTGatcaacagcagaactcagtgGAAATGCGTGAGGCATTCTggtgggattcatacattcattcattaaaaatgcatgccCATTATTATAACGTGTTCCCAACACTAGAATTTCAGGAGCTCAAAGTGTTTGATTTCTAGTTGTTCAGGATAAGTGTATTTAGGCTTATGAGAGGTTCTGGAATAGCTAAAGCCATTATGTAAACACAACTGTGGGTCACACGTGCTGTGGATTAGTGAAACCTTGCACCCAAAATAACCACAagtaaaaaaattgaattttaaaaagcatgctTTGAGGTTCCAGCCTGCTTTATTCCATAGCAGcgtcaaaaagaaaataaactatcTGTGTTGCAAGCACACTGTAGCCTTAAGTGTTCCCCTAGTCACAAGGACAATGGTAGAACACATGCTAAAAGCTTGTACCTCTAATGCAATTTAAGGATTACAAGATcaacacagtaaaacaaaaagaagaaactaAAACCTTCATTCTGGAAAGGGTTTCTTACTGTAACACAAAATACCGACCACAAACTGATCAGACCCTTAAACCACATACTTTTAATCAGaagttatattcatatatatttatgtatttcttcacaTGAAAAAGTTACTAAATACTCCTATTCTTTGTCAAACACTTGTAGGGGATGAATCACTCCGTTATTCCCATATAAAGCTGTAGTAAATTACATCTGCTGTCCTCAAGTCACACCCTCTGTTGATGGACTGTCTGCAGTACTACCGAGCCAAAACAGGCCAGAGGTGCCAATGAAAGTGACATAATGTCCTACTAAATATTATAGGACCAGGAGAGAAATGTCCCAAACACATACTCTCAATATGTTCATACAGACACAGATTACTAAACAGAGATAGGAAATGGCTATATATGTATGTCACAGGTGATTTCAAGCATTTGAGATTGCAACATACATGAAACGTTATACGAAAAGGCATGTATGTTACACACCTTACTACAAAagcttttatgtatgtatatatacagctctggaaaaaattaagagaccactccaagttctgaaatcaatgttaaatgatctctttttccagagctgtatatatattt

Function

GO: NA

KEGG:

id description
K24934 TTC23; tetratricopeptide repeat protein 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33638 lncRNA downstream 17152 33992135 ~ 33993958 (-) True G26848
TU33637 lncRNA downstream 23119 33986547 ~ 33987991 (-) True G26847
TU33586 lncRNA downstream 285214 33725582 ~ 33725896 (-) True G26800
TU33540 lncRNA downstream 370774 33592222 ~ 33640336 (-) True G26764
TU33438 lncRNA downstream 1593610 32413280 ~ 32417500 (-) True G26684
TU33689 lncRNA upstream 146600 34189496 ~ 34223231 (-) True G26883
TU33700 lncRNA upstream 206303 34249199 ~ 34253565 (-) True G26893
TU33753 lncRNA upstream 753273 34796169 ~ 34796853 (-) True G26943
TU33762 lncRNA upstream 773798 34816694 ~ 34816920 (-) True G26952
TU33805 lncRNA upstream 1488034 35530930 ~ 35531438 (-) True G26994
AMCG00007862 mRNA downstream 11372 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 73030 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 197177 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007855 mRNA downstream 213350 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007852 mRNA downstream 254090 33755856 ~ 33757020 (-) True AMCG00007852
AMCG00007869 mRNA upstream 753999 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007874 mRNA upstream 1513354 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 1582914 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 1606948 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 1675128 35718024 ~ 35735817 (-) True AMCG00007877
TU31949 other downstream 8379518 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8746159 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9743189 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 10038445 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 13538406 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 826539 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 3197193 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 3452015 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 3524721 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 3528061 37570957 ~ 37571488 (-) True G27439

Expression Profile