RNA id: AMCG00007868


Basic Information

Item Value
RNA id AMCG00007868
length 2340
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00007868
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34271763 ~ 34325416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGAGCCCGGGCTTGCAAACAGCCAGTACACAGTATGCATGTGTTGGCTACTTTGAGCGCCAGTGCGCCCGGGTGCTGTGGCTGGAGCCCTGCGTGCGGCACCGGGGACGGGCTGGCCGAGCTGGCCGAGCTGCGCTGCTCTCATCCGCGAAGAGGTCAAactctgaaaagaaaaagaaagaaagaagaaaacgaGCACTATTTTGCTCCTTTTATAATGGAGTCCAGCAAGCCTACGGTGTGGAGCAATATCCGCCAGAAGGCAAAGCCCCTGTTTTCCAACCTGAACAGTAGGAAGGGAAAGAAGATCGGCAGTAAGTTAGACATCCGAAAGAAGCATATTTTGGACCAGAGGATGAGTGTCTCTGTGCCAGACATTCGACACATGCCGAGTTCGTCCTCCATGCCCGACGGGCAGGCTGCGTTACAGTTGCCCGACTCTGATGCCTGTTGCTATAGCCGGCCTTCTTCCCCACTAAACAGGCCCCTGACTGACAGCAACAGTGCCACAGCTGCTTTGACTAACAGGCTGGCCGTGCCAACAAATGCAGTCTGGGACTACATGGATTCTGAAGGGACCGAGTTCCCCATATCAAAAGAGGACAACTTTCACGACAGCATTGTTGTATCGGAGTATATGGATCAGGAGGAAACCAAATATATAGAAGGAGCTTCAATGCACATCAAAGATGTTTATCTGGAACAAACTGAAGGGAATATTGAGGAAAATTGTGACCACAATGACCCTAACCTTGACAGCCAGTCATCACAGTTCTTTGAAGAAAATTACATGTTTGACGAGAGTCAGGAGGGTGCctcagcacagacacagaagaCGTACCTTCTGACAATCACgctgaaggaaggaaggaacTTGGTAATCAGGGACCGTTCCGGTACCAGCGACCCCTATGTCAAGTTTAAACTCAACGGAAAAACTTTTTATAAGAGTAAAGTAGTGTACAAGAACCTCAACCCTGTGTGGAATGAATCCTTTGCTCTTCCTGTACGGGATTTGGAACAGAAATTGTACATCAAGGTCTATGACCGGGATCTGACCATGGATGACTTCATGGGCTCCACCAATGTGCTCATGAGTGACCTAGACCTGGAAAGAACTGTTGAAAAGGTTCTCGCCCTGAATGATCCGAACAGCTTGGAGAATGACATGGGAGTGATTGTGCTAGACATGTGTCTGTCAATCAGAGATGGCGAAAGTAAGAAGAATTCGTCTAACATCTTGCAAAACCGGCACCTGTCAGAATCACTACGCAAGAGCCAGCTGTGGAGTGCAGTGGTGGGCATCACTCTGGTGGAGGGACAGGACCTGCCAGACGATGGCCAAGGGGAAGTCTTTGTCCGCTTCAGACTGGGCGATCAGAAATACAAGAGCAAGAATCTGGTTAAAAAGGCAAACCCCCAGTGGAGGGAGAAGTTTGATTTTAACCAGTTCCAAGATGGACCTGATGTGCTTGAGATTGAGGTTTGGGCAAAAGAAGGCAGGAGATACGAGGAGTGCTTTGGGATGTGTGACGTGGACCTGTCCAAGGTGCCAGAGAATGCGACTAAGCCCTTCACTAAGGCCCTGAACTCAGGCAGGGGGAAGGTGGTTTTCCTGATCACTCTGAGCCCCTGCACGGGGGTCTCCATCGGTGACATATGTGCCTCCCCCCTGCAGGAGGCCACTGAGAGAGAGCAGATAATGCAGAAATATTGTTTGAAGAACTCCCTTCAGAATATAAAAGATATCGGTTTCCTTCAAGTAAAGGTGATAAAAGCTGCGGACCTCTTAGCTGCTGATATAATAGGAAAGAGCGATCCCTTTGTCGTATTAGAGCTGGGAAATGACCGCCTGCAGACTCGGACCATCTATAAAAACCTGCACCCAGAGTGGAACACAGTGTTTACTTTGTATGTCGCTAAACTGGCATCAtctaaaaGtatttttgctgctgttgttccATCAACAGATTACTACTCCTTTTGTTCTTCTTCATTTCGCTCTTATTTAGAGGTCCCTGTAATCGAAACACCAATGGTACACAATGGTCATCAGACATCCTATTCATTGAAGAACAAGGACTTAAGTGGGCCTGCCAAGGGGACTATTTGTTTGGACCTGGAGGTCATTTTTAACCCGGTTAAAGCAAGCATCAGAACCTTCAAACCAAAAGAATTGAAATTTATGGAGGACAATCCCAAATTCTCCaaaaagATTTTAGCACGGAACGTGTATCGAGTTAGGAAAATCACCAAGGCGGTATTGCACACGATGCAATATATTAAAAGCTGTTTTCAATGGGAAAGCTCGCAAAGGAGTCTAGTAGCTTTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33704 lncRNA upstream 5345 34266121 ~ 34266418 (+) True G26895
TU33673 lncRNA upstream 18209 34249196 ~ 34253554 (+) True G26875
TU33671 lncRNA upstream 18209 34249221 ~ 34253554 (+) False G26875
TU33615 lncRNA upstream 277781 33992178 ~ 33993982 (+) True G26825
TU33616 lncRNA upstream 281175 33989046 ~ 33990588 (+) True G26826
TU33733 lncRNA downstream 300546 34625962 ~ 34626229 (+) True G26923
TU33743 lncRNA downstream 465340 34790756 ~ 34793855 (+) True G26933
TU33744 lncRNA downstream 468514 34793930 ~ 34794542 (+) True G26934
TU33745 lncRNA downstream 469184 34794600 ~ 34796095 (+) True G26935
TU33761 lncRNA downstream 489744 34815160 ~ 34815389 (+) True G26951
AMCG00007866 mRNA upstream 22688 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007865 mRNA upstream 46122 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007864 mRNA upstream 188442 34065131 ~ 34083321 (+) True AMCG00007864
AMCG00007863 mRNA upstream 219573 34044612 ~ 34052190 (+) True AMCG00007863
AMCG00007860 mRNA upstream 261212 34001037 ~ 34010551 (+) True AMCG00007860
AMCG00007867 mRNA downstream 23071 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007870 mRNA downstream 897048 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007871 mRNA downstream 995203 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007872 mRNA downstream 1212145 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007873 mRNA downstream 1285566 35610982 ~ 35620717 (+) True AMCG00007873
TU32939 other upstream 4496728 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 5267990 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 5817056 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 6177022 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 10077282 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 1285700 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 3819568 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 3843154 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 4030513 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 4106629 38432045 ~ 38436595 (+) True G27551

Expression Profile