RNA id: AMCG00007869


Basic Information

Item Value
RNA id AMCG00007869
length 3898
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00007869
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34796895 ~ 34804878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTCGTGTCAAAGTTCACTATATAGAGAGCGCGGCGCGCGGATCACACGGACAGCATTCCGCACCCCGCGCCGCAAATCGCATTCACTCCCTCACCTCCCCCTGCTTAACATATTTGATCACTTTGATTCTCCGAGCtgggtgtttttttatgattatttctgCGCGCATGAAGGAGATTCTATAGGttgtgatcttttttttttcatgattattattatcattactactCTTGCTTTGCCGGAGAGTTGACTTCATATTGGTCTCAAGCACAACTGCTGCCGCTGCTACCTCTCAGAAGAGCCAGAAGAAGCAgtcatacagagagagagatctatatatgtatttatatatgtctatataagatatctttttttttgaCCAGTTTATGGTTTTCTCAAGGACTTTAACGGGGGATCGCAAGCCGCTGGTATCTTTCAGagttgccttttttctttttggtgcGTGTTGCTTAATCCTTAACCTCTCCGTCCATTTCCTTTACTCGCgggtgcttttttgtgtgtttttgttgttgttgtttttgcattttctttctccttgtttttttcctgctttattttatttttgccttgATGGGTTTCCTGAATGGCTGACTGCAGGCAGCCCTGGACTTGGCCTCTAAGCGCACGGCTGCTCTTCAGCTTGTCCTCACATCAGGTTtaagaaaaagaacagaatCATATATATCGCCATCTGTCTATTTATATCTATCCAAACCCGTCTGAAGCCAATCTCCTCCAGTTTCCACGGACTATCGCACTGCTTCTACGTGagagacattttttttctttgacgTCTGCACTTTCACTGGTGCCCAGCCTGCCTGTAGTCTTTCACCACAGAGATCAGAGCACCACGACGCCAAACACGGGAGACAAAAAGTTTCTTAACGCTGTCTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAAACCCAGGGCACCCTCTCCTCGCAAGCCCCGCAAGGAGGACCACTGTCTCTGCCCACCCCTCAAGCGGGCCAGCTGAACCTGGCCGCCGCTCAGGTCGCCCCTCCGACCCCTCAGACCCCCGTGCAAGGCGGGCCTCCCAGCACCACGGCGCAGCCCACGCCGACCAACCCGACGAGCCAGGGCCAGACGGGCGAGAAGCAGCAGCCGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCCAGCGGCAAACACTACGGCCAGTTCACCTGCGAGGGGTGCAAGAGCTTCTTCAAGAGGAGCGTCCGCAGGAACCTGAGCTACACATGCCGCGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAATCAGTGCCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTGGGCATGAGACGGGAAGCGGAGCCCTACCCGACCTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGgcattgaaaacatttgtgAACTGGCGGCCAGGATGCTCTTTAGCGCCGTGGAGTGGGCTAGGAATATCCCCTTCTTTCCAGATCTCCAGATTACGGACCAGGTGGCCCTGCTGAGGCTGACCTGGAGCGAGTTGTTTGTGCTGAACGCCGCTCAGTGCTCCATGCCGCTCCATGTGGCCCCTCTATTGGCGGCGGCTGGCCTCCACGCCTCCCCCATGTCTGCGGACAGAGTTGTCGCCTTCATGGACCACATTAGGATCTTTCAGGAGCAAGTGGAGAAACTCAAAGCTTTGCATGTTGACTCTGCAGAATACAGCTGCTTAAAGGCCATTGTGCTTTTCACATCAGATGCTTGTGGTCTTTCAGATGTGGCCCATGTGGAAAGTTTGCAGGAAAAGTCCCAGTGTGCTCTGGAGGAATACGTTAGGAGCCAGTATCCTAACCAGCCAACTCGATTTGGGAAGCTTTTACTCCGCCTGCCTTCTCTTCGTACAGTTTCTTCTTCAGTCATAGAGCAATTGTTTTTCGTCCGGTTGGTAGGTAAAACCCCGATTGAAACCCTCATCAGGGATATGTTACTATCTGGAAGCAGCTTTAACTGGCCTTACATGTCGATTCAATAAGCCCAGAAGGAGATCATAAAGAGGGAAGAAGGAAAAAGGCAAAGCTTAAGACTCCCATAGTTAGCGCTTCTTCTAGTAGAAGGAGAACGGCTGTTACCCGAGTTTACTGTAAAGAAGAGAGGCGTTTTTAAAGAGgactgaaaataagaaaagacaTTCAGCCAACTTGCGAATACATTTAAGAACTCCTGTGTCGTTCTGAACAACTTGCTACTTATCATTTTTgtaaaaaggatttttttttctttttggtaaacttttgaggagaaaaagaaactatataaaagtgcatttaaaaaaaggagaatTTGGAGAAAATtaggaggaaaggaaaaaaaaagtaagttttcttttccaaattattataaattgtcCTGTGTCCATGTATCTAtagatgtttttgtattttttttttcttctggttcCAAACCGGCTTATTATGTGGTTCTGTAGTATACAGTTTTGATATAACCATGGCTTCTTATCAAACAGAAAAAACtgtgtattatataaaatatgttctgCAAGAATTAAAACTAAATCCACTTCAATGTTTAGGGGAAGAAACGTCAttttatacaatacataatgcTGGAAGCGCACTTAGTGTAATGGTGACCCATAAATTATCGGGGGTTGGGGTGACTTTGGGCTTCATTTTTAAACTCATTTTAGTGACCCCCAAACTAAAGTATATATTAACCTATTAGGCCATACATTTGAATAGTTGGGAATTCCTAGTTAATATTACTGTAGAGCCTTGTGTCCAAGacacaatacaattcaaaatgaaatggcaaACTTTTTTGGTTAAATGACTGAGATTACGTTTCCTAAATCTTGCATCTTACTGGAATTTTTACAACTGTACACTTGCAACTCGTTTATAGTATATTGTCCATCTTTTGCCCTCTTTGAACCGGTCCATTGGATTCAGCATGAAAAGACACTGTTGGCACTTATAGTTAACGTGGAGAATTCCTAGGATTTAAACAAGTttgtgttgatatatatataaaaataaaaaaactgtttgtttttttaaaaaaacgTGCTTCATTATGTATcctgtaaacatttaaataattgaaatgtttggTTGAGTCATTGTGTGTAAAATTCCAAGACAATAAGATGAAAGTATGTgggaattaaaatattaattgataaatgaaaCTTGTTTGGCTTTACACGTGTATTTTAATCAGGTTTCCCTCGTTCAATTTGTATACCCTTGGGCTTTATACATGCCTCGCAATGCTGatacatgaaaatatttatttatttaacttctttaaaaagggggtgggggtcttCTCGACGTTTTAATATTAGTTGCAACTAAGAATAAGCAGTATTATAAAGTCCCCccaaatctttaaaatgtattatcttgacAAATGCCCTTACATGTCAAACATTAAGTGCCTGTAAAGCGGGAAAATATTAATCTctaataacataaaacaatgtgttacGAATCTTCGAACCACTATAGGGTTTGGATCGTCAGTCTTACGATTGTGTATTTTACATACAAAAGACAAGCAGTTAGAAGCAGTATTGTTGTAAATATAGGTCAATTCCTTTCAAAGACATTTcctttatacaaaatatatgtgattaagaaaaaaaaatctgtggttgccatttttttttataattcaaaatgtcttcAAAATGAGTGACAGACTTAGCTAGTAGCACTGAAGGTTctgtttgtaatgtatataaataatacggaaaataatttgattttcttcttttttaatatatatatatgtataggcctatatatatatatatatatata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33753 lncRNA downstream 42 34796169 ~ 34796853 (-) True G26943
TU33700 lncRNA downstream 543330 34249199 ~ 34253565 (-) True G26893
TU33689 lncRNA downstream 573664 34189496 ~ 34223231 (-) True G26883
TU33638 lncRNA downstream 802937 33992135 ~ 33993958 (-) True G26848
TU33637 lncRNA downstream 808904 33986547 ~ 33987991 (-) True G26847
TU33762 lncRNA upstream 11816 34816694 ~ 34816920 (-) True G26952
TU33805 lncRNA upstream 726052 35530930 ~ 35531438 (-) True G26994
TU33806 lncRNA upstream 732426 35537304 ~ 35537636 (-) True G26995
TU33808 lncRNA upstream 745993 35550871 ~ 35552507 (-) True G26997
TU33838 lncRNA upstream 790552 35595430 ~ 35603175 (-) True G27023
AMCG00007861 mRNA downstream 753999 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 797157 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 858815 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 982962 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007855 mRNA downstream 999135 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007874 mRNA upstream 751372 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 820932 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 844966 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 913146 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 1035275 35840153 ~ 35852765 (-) True AMCG00007880
TU31949 other downstream 9165303 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 9531944 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 10528974 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 10824230 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 14324191 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 64557 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 2435211 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 2690033 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 2762739 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 2766079 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026522 False 1953 mRNA 0.46 3 NC_007129.7 23870402 ~ 23875219 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_01989323_01993472.mRNA True 2658 mRNA 0.45 3 CI01000013 1988531 ~ 1994075 (+)