RNA id: AMCG00007873


Basic Information

Item Value
RNA id AMCG00007873
length 6108
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00007873
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35610982 ~ 35620801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACACCTGCGCTGCGCCAAAGTGTCGAGGCAGCAGCGAGATCAGCGAGATCAGCGAGCACGGTGGGGTGGGTGACAGCACCACGTTATCGCAACCTTAACAACACAGTGACGCCTTTCGTGGTCCCCATCAAACAGACCAATGCGACGTGGGTGACGAATTCTTCCGGGTTTATATCATCCACATTTCCTCCCATTACCTCCTATTCCACATAAAACAACCAGGAAGAGATTGCACTGGGCACAGCTCCGTAAGACAGACATGCTGCGCCAACAGGAGGGCTGCAAATAACGAGCACAGCTGCTGTCCGAGCAAAGCAGGTGAAATGAGGCTCTTTCAGGAGCGCCTTGCATACGTCGAATTGCATTTTCTCCAAATCGTCACGCTTGGGATCTCGGCAGTAGACTGGCAGAGCGAAGAGTGACTTTCAATTTAACGCACAACTGGAAGTGCATGTTCTAGCTCGTATATCATTAATAATCATATCCGTAAACAAGCTGGGTCAAAAGTCACGTTTGAGAGGCAGTAAGATCACGCTTTTGTCTGCCTGTGCATTGAAGCAGGTGACGGTATGTACCGGTTCTGCTTTGCCTGCACTTGCGTGGCTGCGGTGGCGTGGGGCGCTTTCGCCGTCCCGCAGAGCCCGCCGTCCCCCGCCGCGCCGCTGAACGCGTCCACCGCGGCCACCCCGGACGGGCTGTCCAGCAACCGCACACAGGACCGCCTGTCCATGGGCTCCCGCATCTCCTCCCTCGTCAGGGACCTGCCCACGCTCAAGAACATCGTCATCTTCATCTGCGGCTTCACGGCGTTTCTCATCACCTGTCTGGTCGTCAAAGTGTGCAGATCCGGAAGGAAGATCAGAAAGACACGCAAGTATGACATCATCACGACCCCAGCTGAGCGGGTGGAGATGGCGCCGCTGAATGAAGACAATGACGACGACGAGGACTCCACGCTGTTTGATGTGAAATACAGGTGAAGACTGCTGTGTTTCAGAATGATCCTTCTCCAGTTTCCATGGAAAACCCCCCCACAAACAAGGGACAAACATTATGCGTATTGTCTTTTGCTTTCGTCCACTCCACTTGTTCAGTGTCTCAACCAAACACTCCTGAAGCAACCAGAACACAAGAGTTGAAGGTTTGGTTCACTGTGCAACATCAACCAGTCTAATAGTATAAAGAAAAGATAGgtcatgtgtatttattttatttttgtttttgttttggtgtaaCACTATCAATGAAGCCTGAAATAGGACCAGCTAAAATGTGTGAAACCTGAAGCATTTCCAAGATTGGAAAATGATTACAATGATCTTCTTTGAACAAAACCTATTCAATTGcaataacaggaaaataaacttCTCAACAGATTAATGCATGTACTGTAGTTGAATAGGAGCCTTTTGTCTGCTGCCTAAGGGAACTGAACAGGCCGTCTTTCATTGGCCAGTTCCAGCATAACCTAAACCTTGGACTTCATGCTGTTCACATATGTTCCCTCAAgctttatgttgtttattttatggctATTTATCAGAGCAGAGTTCAAATTGCACCTATAGTCTGGAAATGAACTGCAAACTAAGCAAAACTGAAACTTTCATCTCGTTTCATAATCAGGAGTTTATCGGCAGTGAGAAATTACTGCTTAACAGCATCTGTGTCAAACGTAACTCTCCAAGAAATTACACAGAGTGAGGTGGTTTGTTTCCAACAGCAGTGTATTGTTTCTGCTTTGCTAAAGTCACCATGCAGACTGACTTACATGGTTGATGAATAATTCCTCAAAAGTGTGTTTCTGGAAAAATCTtaaaccagttaaaaaaaaaaaaaaaaaaagtccacagCAGGATTTTTCAGCTTTGCTTTTTTGAGTCCCCGTGGGCCAAGACTACTAGTGCCAGTGAATGTGCCCCCTTCTCTGCCCTGTGGTGTCTCTGGCCGGACGAAGAGCAGCCTGCCCTCACACACAGATTTTGAAGTTTTTGGATGTTATACTGAAGGATTTcgatccatttttattttgagttttctcCAGGAAAATGTCAAATCAGTGACACATTAgccatttcaatgttttctcATTTCAGGGTTCATTGATAATGTCAGTCCAGCAATACtggatctgtgtgtgtctgcctcaCAAAAAAGTCATCATCACtcaaatggtaaaaataaattacttctGCCACATAAACTTGACGGCTGTGGGGCTGGggcagaagcagaaaaaaataataggaaCCCAATACACCcaaaacatatacagtaaaaaaaataaaaaataaaaatacgcATTTTTATAAACTAAAACTGGGTCGTTTGAGGAGAGGAAATCCTGAAAACTCATCAATGCTTACTTGCGAGTTATCGTGTGTTTCCTAACTGTTTCgtattgctgtaaaaaaaataaaaaaaaacaagacgaAAACCTATATGTAAAGTTAAATCGTGTTCTAAATAGAGATAGAGTTTATTTTCTATAGTTATATACCTTTGTGGTCAATGTTGAAAAGATGAAAAGAATACAATGgatgtttaaatattgtgatTTACATGTGCTCGATGATCCTTGGGTATTCTGTTGTATAGAATATTACCTATCCACTAACCACTAGTCGTGCGTATGAACTGTTTGACTGCATTGCAGATTGCTTTTTGTGATGCCCTTTAAAACTGGGCCTCCAtaggtgtttttgttgtatCTTTGGGATTCCCCTATGTTGCTGCTACAAGGGCTGGGAttggaaattatttttgcatAAGGAACTACATGTTGTTTGAAGTCGGACAATCTtgcataaaatgtatgaaagcaCAGTTCCTGATGAACTTGTTTTGGGCAAGAGCATAGGACGTGTTTATTCTAGTGTAGTGAATGCAAATGAAAGGTGTACAATTGATACTAATGCAATGGTATTCCAAAAGCTTTATTAGTTAAGAGTAGTTGAGTAGTCTGTTCTGTTGAATACCTGAATAGTAATATCCCCTGTTGATAAGCTGTATTTCAGTGATTATTCCAGAGGATTATcaattgtttgattgatttatctcttttggttgtattttttgtgaACTGAGATCAGTTTTGAATGTGTTATTCTTAAATGAAGTGCCCAAAGTGTTTCCAGTATTATCAGTCTACTGGTGGGATAGTTTCCTTCAGGTCCAGTAGGGCCTAACAATTTACAGTGTGGGTTTTTACTAGCCTATATGAAGGGTCTTGcagaagtatatatttataatcaaattaaatgaagactTTCAAGCCACATCTTTAGTTTTTTGCtcaatttagttttgctttacCCCTTTGATAACTTTATTCTACTTGAATTGAGTTTGAGGCATACATCGCCATCATCGTTTACGGAGACGGCAGCACTATCGCTCAGAAACATGTTTTGCGATTATGTTCAGGCAAAGCAACGATGGCACATCTGCCTGCTCTCCCACGAGGCTCCCGGTAAAGGATTGCTGCACTCCGTGGGCAAGCCGGGGCAGCTTATCTCAATAATGACCTAATCACTTTCAGTATTCAAGCACATCTACTCGTCGGTGGCAAAAGATAACGTACCGATTCATCACAAGACGGCTGCCGGCATCGCACCCGCAGTAAACATCTTTGCTTGTGTTGCAGATTCAGTACCGGCGACTAGCTTTTTGTCCGGTAGATGTGATAAAAGCAGCTTTCGAAATTGAAATGCACGaatcccttttaaaaataacaaaaaaaacccaaagaaaaacaattccaGTTGAGAAAAAATATAGCTGTGCCATCATTTGTTGAaacccttattattattattattattaatattattattattattattattacagcattgttatttaaaaatagaccaaaTTCCTAAAGATGTGCACTAGTAAATGCATTAGAATTGAGGACAAAGCTCTAGTATCTGACTAGAGGTCACGTTTCAGGTAGATTGTCAGTAGAGTGCTTTAAAAGTTATTGCAGAGATTGCATTGAATGAAGGTGACCTTTGTTCTACTAATTCAACTGAACACTGAGTCAAAAAGGGTATCCGCCGTCGGAGAAACCTAAAGAAAGTTGATCTCTTGAACTGGGCTTATTTTTCAATCAATTGATAATTGCACTTTGCCAGCGAAATGAAGCCAATATCATGAATGTCAAATATCTAGATCACGTGAAATTCTACTGTTAAAGTCATGCAtgggaaatataaataaaaatacaatgttcaaGGTTATTGTGTGATTCTGATAAGGTGTCCGAATAAAGGTGGTGAGGTAAGCGGCGTCTTTCCGACTCCAGTCCTGTTTCAATCACACTACATTTCGggaactactactactactgcactACTATATTACAAGCTAAACCACCAGATGGATGTTTCTGCCCAGCTGCtatgtaattaaattgtgtCTCTGATATTAAACTGTTACTATTAAAAGATGTACACAGTGTGTTGACCTATGTAAGattctgtagtttttgttattttccccTCGACTCTAGCTGGTCTTAGGTATTGACTTTGTTCCACTGATCAGTCTCATTTTCTGCTCCATTAATCAAAGTAATGTAACCAAACTCCCATCCTCACCCCCATTTGTCGATCTGATCCCAGTGTGGGGATTTTTCCATTACACATTTGCGTTCCCTACTAGCCAGATGAAATGAGTGCACCTGCTGTTGACCTGCTGCGTAGGTAGAGGAAGTCATTTTCTATTCTGGGTCCCAGGTTGCAAGGAGTCAATCCCTCTAGGCAATGAGTTCTGAGAGGTGTGTTGCTGTGTCTGCTCTTGAAAATGACACGTTATTCCCTAGAGAGGACAGATTCCTCAAACAGGGTGTCAGTTAGGATCAGTCAGGCTTGGTCTGTGGAGCATACAGCTGTTTCAAGATGAAGAGGGTCCTTGACCTTTTAACCACCTGTAATTCCTCAGGGCTTCAGAGCATTTCAATAGGGCCTCCTGGGTAAGACGATCTATGGTGCCAGTTAGACACATCACTGCACTGTTTCTATGTAACCGTTTTGTAGGTGCACTTAAACCTATTGCCACGGCAGCCAAGTTACCTGGTTACGTTTGCAGATCTCTTTCCCTGGCAACctgttttgcaaattaaaacctAATCTCGCAATGTGACCtttattaataaaactaaatagaTACCTTGTTGGGCAAATGTATTGTTTCCCTGGAGGGCTCTTTAGCGATACCCCAGCTTAAGTGTACATTAATTTGTCTTGTcgagttaattatttaaaacaatcccACCTTTTGGTCCTGTCTGGTATTTATTTCAGCCTGTCTGTCCTACATATCCACTTACAAACTGGAATACacaacatataatatatatatatatatatatatatatattatattaaatttatTCTATTTTGTTACAAGAACAATTTGAatgcaaatatgtttatttctttagtgGTTCTTATGAATTTACTGTCCATAAAACACTATTGTATCTTTTTCTTGTAAGTGCATTTCTtggtgaatgtttttgttttgttttccttcatttgtGTCACTTTCCTGTTCACTGTCCTGTATTTTAATGTACCTGTACAATATAGTTTTCATTGCCAGTGAATAcacataaatgaatgaataataagaGCACAGTTCCTTTCCTAGCTCTTGGaacattactttttcatttgtcccatttatgtaaaatgtcaCTATGTTCTTATCGAAATGCCCTGCTAGCTGGCATCTTGGCATTATAATGACGCTGACATGGAGAAAATCTATTGCAGTGTGTACTGACCCATCAGTGAGGATCATGCTACCTGCTACACTGTGACTAATGCAATACATGTGGCTagacatatattttttataacctTTCATGACATGTAAGCAAGTAAAACATATCTCGGACATCGCAGCAAAGCTTACAGAATCATGCACGTGTTTACGGTTTTATGGTCTGAACAACATCCTAGAATAGAAATTTGACAAGCCCTTTTttatccttttaaaatgattgaacTCAACACATAAAACCCCAGTGTTCTGCTGGTCTCATGTCTGATTTCACAATCTTCTGTACCACattcttgttatatatatagatgt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33840 lncRNA upstream 2345 35608423 ~ 35608637 (+) True G27025
TU33836 lncRNA upstream 7800 35595413 ~ 35603182 (+) True G27021
TU33809 lncRNA upstream 51423 35556145 ~ 35559559 (+) True G26998
TU33804 lncRNA upstream 58479 35550842 ~ 35552503 (+) True G26993
TU33789 lncRNA upstream 320737 35290036 ~ 35290245 (+) True G26978
TU33874 lncRNA downstream 186651 35807368 ~ 35842842 (+) True G27052
TU33907 lncRNA downstream 282327 35903044 ~ 35903259 (+) True G27079
TU33921 lncRNA downstream 366584 35987301 ~ 36000934 (+) True G27089
TU33940 lncRNA downstream 408741 36029458 ~ 36030333 (+) True G27108
TU33944 lncRNA downstream 481579 36102296 ~ 36161392 (+) False G27111
AMCG00007872 mRNA upstream 62075 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 287092 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007870 mRNA upstream 382258 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007867 mRNA upstream 1257348 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 1285566 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007878 mRNA downstream 191009 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007881 mRNA downstream 239914 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007884 mRNA downstream 396970 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 664266 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007889 mRNA downstream 675501 36296218 ~ 36302811 (+) False AMCG00007889
TU32939 other upstream 5835947 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6607209 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7156275 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7516241 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 11416501 24192221 ~ 24194481 (+) True AMCG00007631
TU34416 other downstream 2524267 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2547853 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2735212 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2811328 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 3072022 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile