RNA id: AMCG00007874


Basic Information

Item Value
RNA id AMCG00007874
length 8496
RNA type mRNA
GC content 0.45
exon number 37
gene id AMCG00007874
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35556250 ~ 35594137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCTCTAGATGGCGGCTGAGCCTTGGAGAGGAGAGCGCATTGAGAGTAGCTGAGCTTCTCCAACACTTTGTGTAACTTTTAGCAACTTTTAGGCCGCCGCAGGGGCCAATGATCTGCATTATTAGTAAATTTAGCTTCCTTACGTCTTATTTTATTCGGAAAAGAGTGAAGCCTTTTGTTAGATTTCGATGCCTTTACCGAGAGGAGAAATACAGTACAGTCTATGTGCGAGTCGTTGTTTTCCCAGCTTAGCACGGCAGCCATGGCGCACCTCCATTTTTAGTGCGCTCTGCTAGGCTGCTTATCCGCCTCTTATTTCATCAATACTAGCTTAcgattacatgtttttatttgtattgaataaaacaataatctgtcgatatatgtatatatatttgaaacgGAATATTTGCTTTTGGAAACCCAATAACGGAATAAAGGACTTCATTGACAGACTGGAAAGCAACACTTCATTCTACCTGTCTGTACATGGAAGAGTAAATACCaggacataagaacatcagaaacaaAAGTTTTCAGGATACAAAGATGATGaagaataagaacaaaaaagcTGAAGATGACGGGTCGACCCAAAGCAATGCATCAAGCAATTCTGCTTCAGAAGAATCAAACCACTCGGTGTCGGAGTCTGGGAGTCAGTCGGAGAGCGAGCAGGGCAGCGAGCGAGGCAGCGTCGCACGTGGCACCGAGTCCAACAGTAGCTCTGAGTCGGAGAGCCAGTCCGATTCAGAGTGCGAATCGACAGGATCCAAATCCCAGCAAGCCTCCTCTGAGATGAAGGATAAGCCAGTCAGCAAGAAGGATAGATTAGCAGATGTTAAGAAGATGTGGGAAGAACATCCAGATGTTTATGGGGTCAGGAGGTCGAACCGGAGCAGACAAGAGCCTGCTCGTCTTAATTTTGGAGCGGAGGGCAGCAGCGACTCTGAAAGTGAAAGTCCTAAAAGGAAAGGATTACGACCGAAGAAGGCAAAAGAAAATATCTGGAAAGATGATGGCTCTAATGACGAAGaagatgaggatgaggatgaggatggtGATGAGGATGAGGAGGTGGATGCCAGCAGTTCAGAAAGTGAGCAGGAAGAGAGAAAAGTTAGATCCAGACGACCTCCAGCCAGAAGtTATAAAGAGGATGAGGATGACTTTGAAACAGACTCTGATGACCTGATAGAAATGGCAGGGGAGGGCACAGAAGAACAGCAGGATGACAGCGAAACCATTGAAAAGGTCATGGATGCCAGGACTGGAAAAAAAGGAGTCACAGGGGCCTCAACGACGGTATATGCAGTGGCAGCCAATGGCGATCCGGGTGCCGACTTTGACCCCGAGAAGGACGAGGGAGAGACGCAGTACCTCATCAAGTGGAAAGGCTGGTCATACATACACAACACGTGGGAGAGCATCGACACCCTCACCCTGCAGAAAGTCAAGGGACTGAAGAAGCTGGAAAACTTCAAAAAGAAGAACGATGAAATCAACGCATGgCTGTCCAAAGCATCCCCTGAAGATGTTGATCATAAGACCTCCACCTCCAATGAACCGGAGTACCTGTGCAAATGGATGGGTCTTCCCTATGCTGAATGCAGCTGGGAAGATGGCGCTCTCATTGGGAAAAAGTTCCAGCACTGCATAGACAACTTCAACAACCGCAACGCCTGCAAAACTATCCCTTTTAAAGactgcaaagTATTGAAACAGAGGCCAAGGTTTGTTACATTGAAGAAACAGCCATCGTACATCGGAGGAGAGAACCTGGAGCTCAGAGATTACCAGTTAGATGGTCTGAATTGGCTGGCCCATTCGTGGTGCAGGGAGTTTGATATCTGGGCCCCCGACATGAATGTAGTGGTGTACCTTGGGGATGTCATGAGCAGGAAAACGATCCGTGACTATGAATGGGTTCACTCACAGACAAAGAGAATGAAGTTCAATGCACTTTTAACCACCTATGAAATTCTACTGAAAGACAAGACAGTGTTGGGCAACATAAACTGGGCATTCCTGGGAGTCGATGAGGCCCATAGACTGAAAAACGACGACTCTCTGCTGTACAAAACCTTGATTGACTTCAGGTCCAACCATAGGCTGCTCATCACAGGGACACCACTGCAGAACTCTCTGAAGGAGCTCTGGTCACTGCTGCACTTTCTCATGCCTGAAAAATTCGAGTTGTGGGAGGACTTTGAAGATGAGCATGGCAAGGGGAGGGATAATGGCTATCAGAGTCTCCACAAAGTCCTGGAGCCCTTCCTCCTGCGCAGAGTCAAGAAGGATGTAGAGAAATCCTTGCCTGCTAAGGTGGAGCAAATCCTCAGGGTGGAGATGTCAGCCCAGCAGAAGCAGTATTACAAGTGGATTCTGACTAGGAATTACAGGGCCCTCTCCAAAGGGACGAGGGGAAGTACCTCTGGTTTTCTCAATATTGTCATGGAGTTGAAAAAGTGCTGTAACCATTGCTATCTGATCAGGCATCAGGATGAGAACGAAACAACCCAGCTGGAACACTTGCAGGCGCTGGTCCGAGGCAGTGGGAAGCTCGTGCTCCTGGACAAGCTGTTGACGAGGCTCAGGGAGAGAGGCAACCGGGTCCTCATCTTCTCCCAGATGGTGCGGATGCTGGACATCCTAGCAGAGTATTTGGCCATCAAGCACTATCCGTTCCAGCGCTTGGATGGTTCAATAAAAGGAGAAATACGAAAACAAGCACTTGATCACTTTAATGCTGAAGGCTCTGAGGACTTCTGTTTCCTGTTATCCACACGCGCAGGAGGCTTGGGGATTAACCTGGCTTCCGCGGACACTGTGGTCATCTTTGACTCGGACTGGAACCCTCAGAACGACTTGCAGGCACAGGCCCGGGCCCACAGGATTGGGCAGAAAAAGCAGGTGAATATTTATCGGCTGGTAACCAAGGGGACAGTAGAGGaagacatcattgaaagagccAAGAAGAAGATGGTTTTGGACCATCTTGTCATCCAGAGAATGGACACGACTGGACGGACAGTGCTGGACAACAACTCAGGAAATTCAAACTCAAATCCATTTAACAAAGAGGAGCTGAGTGCTATTTTAAAATTTGGAGCAGAGGAACTTTTCAAGGAACCCGAAGGCGAGGAGTCGGAGCCTCAGGAAATGGACATAGAGGAGATTCTGCGCCTGGCTGAGACCCGAGAGAGTGACCCGACAGTGAGCGCCACCGATGAGCTGCTGTCTCAGTTTAAGGTGGCCAATTTTTCCACGATGGAAGAGAGTGCCCCTGAGCTGGAGGAGAGGCAGACCACAGACTGGGACGACATCATCCCTGAGGACCAGAGGAGGAaggtggaggaggagcagaAGCAAAAGGAGATGGAGGATATTTACATGTTGCCCCGGAGCAGGAGTTCCACCAAGAAGGCTCAGGCAAACGACAGTGACTCCGATGTTGGCTCCAAGTTAAAACGGAGGTCTTCAGGCTCGGAAAGCGAGACCGATGACAGCGACGACGACAAACGGCCGAAGAGAAGGGGTCGGCCACGTGCACGTAAAAACAATGTTGAGGGCTTCACAGACGCCGAGATTCGCCGGTTCATCAAGGCGTATAAGAAGTTTGGAGCGCCTCTGGAAAGGTTGGAAGCCATTGCTCGTGACGCCGAGCTGGTTGATAAGTCCATTGCTGACCTGAAGCGCTTGGGGGAGCTCATTCACAACAGCTGTGCAGCAGCAGTACAAGAACACGAGGAGCACCTGAAAGAAAACCCCAGCGAAGCTAAAGGCCCAGGGAAGCGGAGAGGTATCACCATCAAGATTTCAGGAGTGCAAGTCAATGCCAAGTCCATAATTCAACACGAGGAAGAGTTTGAGCCGCTGCATAAAGCCATACCTGTTGACACCGAGGAAAGGAAGAAGTTTCAGCTGCACTGTCGCGTGAAGGCTTCCCATTTTGATGTGGACTGGGGTGTGGAGGAAGACACTCAGCTGTTGCTGGGGATTTATGAGCATGGTTACAGCAACTGGGATCTAATCAAAACTGACCCAGATCTCAACCTGGCCAATAAGATTCTGCCAGACGACCCTGAAAAGAAGCCCCAAGGGAAGCAGTTGCAGTCCAGAGCCGATTACCTCCTCAAGCTGCTGAAGAAGGAGCTAGAAAATAAAGATGCCTCTGCACAAGGGGATGAGGTCAGTAAAGAGACCAAAGTCAAGAAGAGGAAACCCAGattgaagaaggaaaacaagGCACCCAAGGATGAGCATGGAAATGAGATCTCCTCACCTCGGCTTTCCGACAACGCGTCTGAAGAAGGGGAGGTCAAGGATGATGGCACTGAGAAGGCTCCCacaaagaagaaacagaagaagaaggataataaagaaaacaaagagaaacaggGAACCcctaagaaagaaaaagatggagacaaagacaaaaagCGTTCAaagccaaaaaaagaaaagACCAAATCAGGAGTGAAAGGGAAGAAGTCCCAGGGGCCTGTGCATATCACTGCGGGCAGCGAGCCGGTGCCCATCGGAGACGAAGACGACGAACTGGACCAGGAGACTTTCAGTGTTTGTAAGGAGAGGATGCGGCCGGTGAAGAAGGCGCTGAAGCAGCTGGACAAGCCCGATGAGGGCCTGTCCGTCCAGGAGCAGCTGCAACACACGCGTACTTGCCTGCTGAAAATCGGAGACCGAATCACAGAATGCCTTAAAGCCTACAGCGACCCGGATCATGTGAAGACATGGAGGCGaaacCTCTGGATTTTTGTGTCAAAGTTTACTGAGTTTGATGCCAGGAAGCTTCATAAGCTGTACAAAATGGCACAAAAGAAGCGATCGCAGGAGGAAGAGAAGGAACATAAAAAGAAGGACGACTCCTCAAGCAGTAAAAAGCCATTCCGGCCGGAGCCCTCTGAACGAGGAGACTGGCAAAGAGACCGCAAATACGGTTACCCGGGAAACAGCAATCAGTCGTGGTCAGGCGATCGGCACCACCCATACGACCAGCATCGCTATAAGGATCACCATTACGGGGATCGGAGACCTCACAGCGACCCCTACAGGAGCTCCAGCAACTACCGCATGGGCGGCTCCCCCCGGAAGCGGCCGTATGACCAGTATGGCAATGACCGTGACCACCGCGGCCACAGGGAATACTACGACAGgCATCAAGACCCGAAGCGAAGGCGCTCAGATGAATTTCGCTCTCAGAACTACCACCAAGGTGGCAGCCAGGACTTCAGACGGATGCCTGAACACAGAGCTCAGGGCAACCACGGCCCGGGGGGGCCAGAACACTATCGCCCTTTCCACACTGACAAACCAGCGGACTACAAACCGCCTCCTGCCTTGCTGGACCCCCGATCCCCACCGTCCCAGAAATCCCCACATGACTCTCGGTCTCCACAAGAAAGGACTGGAGAACAGAAAGGAACCCCTGACTTCAACTGGAACGCCAGAAAAACATAGACGTCGGTGGCTAAACTCGCAACCAGTAAGGATTGAGGATACTGGAGAAGAGATCAATGCTGCTAAATACCAGTCATGGCTTGACTTTGAATTAGACTCTTCTTTGCTTTGAAGTTGCCAGTTTTTAATCTGGTGACCCagaaagagagaagaagagagcGAAAAGACAAAGCTCTATTTACCAGCGGACTAATCCTCTCCGTTTTGTATTGACTTTTTCACATACCTGTGGCTGTGGTTATGTGATGGGCACAGATGGAAGTCTAAAAATGGTTTATATACCCTGTGCTTGAATTCAACTGGAAAGATCATTATGCTAGAGAGCAGatcataaaaaaagaacatgataAACATAACGATCTTTCTATGTGTTTGCTATGAACAAGAAGGATGTCAATGTGGTGAGTCCTGTGGACTGTTGTGTTGGGAGTTGGTTTTGCCTTTATTACTGGGCCAGGGTCAGAATGTGAAAGTGCCTCAAAACGCGTggcttttgattttgaaagtaTTCAATTGGATGTCACTGATGTATTTCCTAAgttgttattttgttcatatgtagattttttttttctctgtcaaaTCTATTGTCTTGATTTTTGGGGTTGGAGGCACCAAAGAACGGTTCATTATGGGGACAAATGTTTATCCAGCCTGCTAGTGTAAGTCTCTATCAATGAGGTCAGATGAATgtgaatggaaaacatttgtctCTTTACAGTttgatttgatatatatataaaaaaattacacacagaTTGATAAGATAtattataatttgattttaaaggcagatgcaatgtttttgttttgtttataattctCAAATACTCTTTTAATATTTGCACCTTATTTATATTCTAGTGGAAAAAAGGTGAAAAGATGAAACCGTTTGTCAGATGCACTGCCTATCCTTTTTCAGAGAGCAAAtatctttattttctccttttaatTATCCAGATAACTTTGAATATTTCGATAAAAGTGACACTCGTCATTGCTGCGCTCAGatttatgaaatgcattgaCCGCACTTTCCTGTCATTAAGCTATAGTTTATTTGTCTAATCAGTTACTAATCTTAATTAAGCCATCCATGAAGCTGAATGCTAATGTCAACCTTGACATGCAGGTACTACCCAGTATTTGAGGTTGTCACAGACCTCACTAGGAAGTTTAAAGACACTAGAATTCTATCTcaagataatgtatttttagccCAGTTAAAAGcctatattttttctttccaaaaaatatttttcactggcaatgtgtgtgtgtgtaatatatatatacatatatacatatacacacaaacacacacacacttcattgCCAAATTGAATGGGATAAGCCTCCCTCCACTGGTATGGGACCGTGCCAGAGGCTGTGTGCTAAATAAAGCTTGGTTTAATGTTAAGGGTTTCATGAAGGCCAGTCAAGGGACCTGATTGAAGCCCGTTCTGCAGTTGGGAGTGAGGCACAGTGGTTCTAGACCAATAGAGCTGAAACCCATTTCACTGCCTGCTCAGTTCTGGCCTCACTCCAGGTGCACAGCTTTGGGATGGACTTGAATTGCAAACCAGAGACCACAGACACAGTCTTCTCTCGCTGCACTAAACAATGGTGCTGCAGAAGGAATTACACAGTATTCCTCCAGCAATCTCTGCAAAGGATTCTAGAAGTAATTAAGGCCAAGGATGGGtattaaaaacattctgaatAGCAGCCTCTTCTGTGTTGCCCCAATACATTTGGTAATCTagtgtatgcatatgtatttgtatgtatacatgtatatgcatATCCATCTGTCTATACACAgaaccacaaacacacatataggctatatatatacatatatatatgtgcgtgtgtgtgtgtatgtatgtgtctgtatacacacaaaaaaaacactactttaaaactgctgttctaaatgtatttattcttaaatcATATTTTCTGGTGTTTGAAAGATGAGCTGTTGCAACATCTTTTAATACCATCGTCGAAACAAAAAGCTAACAATATGAATGTGGTACTTTTTAAAGCTCCTCTTGCACTGAAAGTACAGTATTTCAGttacaggaaatgtgtaacattAGTTGTAAATTCCTTTATTCTGAGTATTTCTGTAGCAACAGGTAAATGATTATTGGAAGGAAAACGTGTCCTTGTTGTGggatatatagatatttaatacatgttcttttttttttaatctatagaTCTTTGAGAAGGCCGTTTCTTTTGTACTCCAATGATTTTTCAGTGCAAGGGAAAACAACCTTGATGGAATTCAAAATGGGATAAATAGACCTTTTTCAACGTGATTGAAATGGCTGTTGCtaatcttaaatacatttcagtgccATATGACATGCAGTCTTGACCAGGTTAAGTGTTAAATGTTCGAAGTTGTAGTGTGCTTTTCCAGCTGTGCCTTATATCCTTGTGATATATTGTCGTCAATGTGTGTTTGAATATTGATATTGTCACAATACGGAATTAATGCAGTATTAATTGATAGGACAGCAACTTACTATGTATGGATTGTGTGAGGGGCATGGAATGGACTGCAAAATCTGGTACGTGTCGCCCAGTTTCTACAGGTCCCAAAGATTCAGCCCAGTGTTGATCATGAATTTTAGAGGCTGGCTTTCCCACACCTCGCCTGGAATAAAACCATGCAGCTGCACAGAAGAAACGGCATACTACACCTCAgcagaaagacacagacacttCTATTGTTACAAGAGGTGAAGACGAGTCATTGCCAACAGCCCCTTCTTtctcatttgcttttttttttttctccaggatTACACCGATGTgtagtcttaaaaaaaataagaaaataaaagaactttgaagaaaaaataatttatatttgtgaaaAAGCCACTGTTAAGTGAGTTTTGctgtaaatatgttgtttatagtcctatatgtattaaattttTCCTACATTGTAAACCATTGTCCTCTGAGGATTTATTAAAGAGAGTTCT

Function

GO: NA

KEGG:

id description
K20091 CHD2; chromodomain-helicase-DNA-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33808 lncRNA downstream 3743 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 18614 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 24812 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 739330 34816694 ~ 34816920 (-) True G26952
TU33753 lncRNA downstream 759397 34796169 ~ 34796853 (-) True G26943
TU33838 lncRNA upstream 1293 35595430 ~ 35603175 (-) True G27023
TU33928 lncRNA upstream 409056 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 415339 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 432586 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 435332 36029469 ~ 36030312 (-) True G27109
AMCG00007869 mRNA downstream 751372 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1513354 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1556512 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 1618170 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 1742317 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007875 mRNA upstream 31673 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 55707 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 123887 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 246016 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007879 mRNA upstream 261751 35855888 ~ 35859285 (-) True AMCG00007879
TU33771 other downstream 686443 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 9924658 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10291299 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11288329 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11583585 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1645952 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1900774 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1973480 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1976820 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1978897 37573034 ~ 37588525 (-) True G27442

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_01443540_01469011.mRNA True 5163 mRNA 0.49 34 CI01000013 1443540 ~ 1469076 (+)