RNA id: AMCG00007875


Basic Information

Item Value
RNA id AMCG00007875
length 1068
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00007875
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35625810 ~ 35637920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTTTGAATCCCGGTGCTTTCTGTTCGCCGTGGTCACGGTACTCGTGGTCTTCCTCATTTTGGCCGATATCTCTGAAGTGGAGGACGAGGTCGGAAATGCTGCTGCCCAGACAGACACCACGTCAAGATCCTTGGTTGGGAACATCAAAAGAAGAATCCATAACAGTAGTAGGACGATATCTCCTTCCGAATGGAGGTTCAACTCTAGCCTTTCTCGCTCCATCAGaaaaaatatcCTAAAGTTTCTGGATGCTGAAAAGGACATATCagtgctgaaaggaaatctgaaGCCTGGAGATACGATCCATTATATATTTGATCGTGACAGCACTATGAATATCTCAGAAACCCTTTACCAGCTGATTCCTAAAGTGTCCCCTATGAAACAGCAACACTACAGGAAATGTGCTATTGTGGGCAATTCTGGAATTTTACTGAACAGCAGATGTGGAGAAGAGATTGACTCCCATGACTTTGTCATCAGGTGTAACCTGGCGCCCGTGGAGGAGTATGCTGACGATGTTGGCCTGCGCACCAGTCTGGTTACCATGAACCCTTCAGTGGTCCAACGTGCCTTCCAGGACTTGGTGAGCGAGAGCTGGAGGGAGCGTTTCCTCCAACGCCTGCGGAGCCTCAACGGTAGTGTGCTGTGGATCCCCGCCTTCATGGCCAAGGGCGGCGAGGAGCGCGTGGAGTGGGCCAACGACCTCATCCTGAAACACCACATCAACGTGCGCACTGCCTTCCCCTCGCTCAGGCTGCTGCATGCTGTCAGAGGGTACTGGCTGACAAACAAGGTTCCCATAAAACGTCCGACCACCGGGATGTTGATGTACACCTTGGCCACGCGCTTCTGCGAGGAAATCCACCTCTACGGCTTCTGGCCTTTCTCCCGAGGCCCGGCCGGAAACCCGGTGAAGTACCACTACTACGACAGCCTAACGTACGAGTACACGGCCCAGTCCAGCCCTCACACCATGCCTCTGGAGTTCAAAACCCTAAAGAACCTGCACAGCCAGGGAGCTCTGCAACTGCACACTGGACCCTGTAACACGAGAACGTAA

Function

GO:

id name namespace
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06612 SIAT8B; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33838 lncRNA downstream 22635 35595430 ~ 35603175 (-) True G27023
TU33808 lncRNA downstream 73303 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 88174 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 94372 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 808890 34816694 ~ 34816920 (-) True G26952
TU33928 lncRNA upstream 365273 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 371556 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 388803 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 391549 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 464386 36102306 ~ 36149276 (-) True G27123
AMCG00007874 mRNA downstream 31673 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007869 mRNA downstream 820932 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1582914 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1626072 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 1687730 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007876 mRNA upstream 11924 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 80104 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 202233 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007879 mRNA upstream 217968 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007882 mRNA upstream 293322 35931242 ~ 35941429 (-) True AMCG00007882
TU33771 other downstream 756003 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 9994218 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10360859 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11357889 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11653145 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1602169 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1856991 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1929697 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1933037 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1935114 37573034 ~ 37588525 (-) True G27442

Expression Profile