RNA id: AMCG00007876


Basic Information

Item Value
RNA id AMCG00007876
length 7875
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00007876
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35649844 ~ 35665471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttacaggtATCTTATTCTCAACCCTGGTGTTTGGCCCAGCCTGTGGGTTCATTCTGGGGTCTCTCTGTACCAAAATCTATGTGGATGCTGTCTTCATCGACACCAGTAAGCTGGACATCACCCCCGATGACCCTCGCTGGATCGGAGCCTGGTGGGCCGGCTTCCTGCTGTGCGGTGCCTTACTCTTCTTCTCGGCCCTCTTCATGTTCGGCTTCCCGCAGTCGCTGACGTGCCAGGAGGTGGAGAGCGGCGCCGAGAGTGAGCAGACCATGCTGCCCGAGAGTCTGCCCCGCGACTACGAGAGAGCCAAGCCCAGCAACGGAGTCCTGCGTCACCCCCCGGAGCCGGACGCCGGCCCGTCGTGCTGCCAGCAGCTGCGAGTGATTCCCAAGGTGACGAAGCACCTGCTCTCCAACCCTGTGTTCACCTGTATCATTCTGGCCGCCTGCATGGAGATTGCAGTTGTCGCTGGTTTCGCTGCCTTTCTGGGGAAGTACCTCGAGCAGCAGTTCAACCTCACCACTTCGTCAGCCAATCAGCTACTCGGCATGACAGCCATCCCCTGTGCCTGTCTGGGGATCTTCCTGGGTGGACTGCTGGTGAAGAAACTCAACCTGTCTGCTCTGGGAGCCATCCGAATGGCCATGCTGGTCAACCTGGTCTCCACCGCCTGCTACgtctccttcctcttcctggGCTGTGACACCGGGCCTGTGGCCGGGGTGACCGTGGCCTATGGCAATGAGTCGTCCCAGTCTGGGCTGAGGCCAGTGGCCGCCTGCAATGCGCACTGCAACTGCCTCACAGATTCAATCAGCCCTGTTTGTGGCTCCAATGGCGTGACGTATCTGTCTGCCTGTTTTGCTGGCTGTTCCAGATCGAACCTCACAGGGTGCGCCTGCATCTCTGCAGACCGGGCGGAAAATGCTACGGCTGTCCCTGGCAAGTGTCCCAGCCCTGGGTGCCAAGAGGCCTTTCTGACCTTCTTGTGCGTGATCTGTGCCTGCAGTATGATTGGTGCCATGGCACAGACCCCCTCTGTCATCATCCTTATCAGGACCGTGAGTCCCGAGTTGAAATCCTACGCATTGGGggtcctcttcctcctgctgcgACTTCTAGGTTTCATCCCACCTCCACTGATTTTTGGTGCTGGGATTGATTCCACCTGCCTGTTCTGGAGCACCGTCTGCGGGGAGCAGGGCGCCTGTCTCCTGTACGACAATGTGGCCTACAGGTATCTGTACGTCAGCATCGCCATCGCTCTCAAGTCCGTGGCTTTTATCCTCTATACCACCACCTGGCAATGCTTacggaaaaactacaaaagatACATAAAGAATACTGAGGGCGGCCTGACCACCAGCGAACTGTTTGCCTCCACCCTCACCCTAGACAACCTGGGCAAGGAGATCAGTCAAAATCCAGCCAGCAGGACAAAGTTTATATACAACCTCGAAGACCACGAGTGGTGCGAGAATATGGAGTCTGTTTTATAGCTTTGACTTTAATCAGAgttcacaacaaaataaaccaatacaaataaaaatataacatagAACAGAAGAACGTGACACTATATACCAGTCTCTTGAAGGatatcctttctttttttgtctgaaaaaagaaaagacaaaatatttaaaaattcagTTCATGCATTTTAAGTCCTGTTCAGGCCCTGGAAGACTGTTGCTGCTGTCTGCTCCAAATCCACGTTTGACTCGTTAAGGGTCCATTTTTAGATCTGATTTCTGCAAGGATGTCATCCAATACGGTGGCTTTTAGCAACCAACTGCTCTGAGTTTCCACCCTTTACCAAGTACTGGCTGGTTTCCTCCTGATTTTAAGTGGTAACTTAAATGATTCTATGTCAGCTTGATCGGGATCTGAACCCAGTCTCTTTAAGTAAAGGAACCTCTTTTTCTCCATTATTTGAACTTATATATCTCCAAATCTccaaaaagtgtaattttttatttattttttattcgcTATTATTTATCCTACTTGCGGATAGCTGTTTACAACACAGGAGTTCTGTCATGGaaaaatactatataaatgTCACAGTCAAGTCTAGTGTTAGTGACTGAAGACCTAGGGCACCGATTATATCAGCATAGATTTGCACATTAAAAGAATGTGTCCTCAAAGGTTGGTATATTATCCAGCATTGTTGACATTAAACatcaacaattttttttattcattaaaatgaacaacttTCATTAAACATCTGGACAAATTGTtcacttttctttcattaaatattgCTTACATTTGTACGTCATTTCTATTACTATATTAAAAGCTTCACTAAATGCAGTAATCTGGTATTTTTGGTTTGACCGCTGAAAGCCTTTGGATTTTCAGAACGTTTTTAGAGAGGGTGCCCGAGAGCTAAGGAAAAGggattgtttgtatttatttcattttaagctGTTACTTTCATTAAGCCATTGAGATTTTTCAAAAACCCAGACAAGAGAACAAAATCCAGGTTTCTGGTACTGGAGTCATAGTTCGCCGTGAATGTATACACCACTGTGAGGAAAGGAACTGAAggaactgaatacatttttttatgtagagTAGTTCTGCATGTAACATTTAATAACTCATTGATCTTcttttatttatcagtttgaCTCTAGTTTTATTACTCAGATCTAGTTCTTTATATTGATTGTGATGAGTAGAGGAACCACTGTTTCCatcaggaaaagaaaatagCAGAAACATTGGAAAACAAAGGAGTGTCTTTATAAAGTGTACACCAAATAGGGGCAATTAAGACGTTAATGCCATTTGTTATGCACCACATTGAATAGCAGGCTACTACTGAAATATGTTTCATTGAGATATCCCAAGAAACCTTTAATCTGTCACTCACGTATTCTGCATCTCAGAAGGTCTAGGATTCTGTGTTCTTGTGTGCCATTTCACATTCTGAAGCAAAGTTCTAGATGATTTATAAAGATGTATTTGCACATTTCATTCAGAGCTGTTCACACTTAATtccagccttcagtgcccctcAGGTCATTGCTATCTTTTccttctgtaataataataatgtttagcattcatgtattctgttttttttttttatatctcaTTCAGGTGCATTGTCCATGTCATTGTCTATGAACCgtttttgtcatttgtcaaaCTGCTTCTTCTACTTCTTTGGTTATTACAAAAGCAGAGGTCTTTGTCTCTGAGTATCTTTTGTGGGAAGAAGAAGGCTTGCAGTCggtgaaatgtatgtatgatgCATCCCAAACTGAGCTTCAGAATGTGAGGAAGTGCACAAGAGCTAATACATCTTCTAAAACAGCACATACATCAGTGATAGTAaagtttctaaaaaaaaaagtgtccatCAGAATTTTTAGGCTTGATAATCCATATAGcactttcttatttattaacagTGCATATATACAAGACAACAAACAGGTCAATAGTCTATTGATAGTATCACCGTGTTCCCTCTCATATTTTTACTCTTACAAATTGGTTGTCATTCTTTTATTcagccattttttattAGCTACTCTCGGCTGTAGTCAGCAAGTTAAACTAACAGAAGTTTTCTGCTGctacagaacaaaaacagatattACATCAAATTCACCAGTTTCTTAGTTCTTCATCCAGTCAACCTTCTAGTTAACAATGGTGTatcaaatagaaacaaacaccaaaagTAATGAACACCAAATCTGTCTTGTTGACAGACAATGAACCCTTCATCATTGATTTGCCTTTGCTTCATTTTTTGGGGCAGTTATCTGTTATTAACAGTGACTTGAAGGTGGCATCTTATCACTCCAAAATAGGTGGTGGGAATTGAATGGGGGGTGGTGTGGATTTGTGATTGAATCTGAGACGGCCCCCCATTTACAAAGCAGTTAAACAGATTCCCATCTGGAAGTGAGATTACACCCAAGGTGAAAAAAGCAAGAAATAGATGCAGGATGTGGATAACTAGGAATGCCACCCGAAGACCCATATTATATCTTTCATATAATCAATCTGCTTTTAACAGGCTGTTTTATATACAGCCAACATTTCTGCAAGTAACTGGTTCTGCCGAGCCTGATTTTTCTGCTTCATAAATTGGCAGCAGCCTGGAATGACATTGCATGCTTGATGAAATGTAATAGTGCCATTGCTAACATACTGTTTTCATCTTAAAGCAGCTTACAGGCCCCTTTAGGggttgataatatatatatattttatattagaaTGGTCATGGACTTTGTGATCACTTGAAAACCAGCTCATACTCCATTATGGATCACTTGTCGTTTTCAAGGTTTTAGTGAAGATGCCACATTTTGTAAACCCACCAAAAGTCACAACATAATCTCAAGAGGTGTGTTTGTCATGTCGTAAAGGCTTACACTGTGAGTTTTCAATACCTCCAAACTTTTTCTAAAGCATTCCTACATCAGCACACCCCTACTATATAAAATAGACCGTTTTAGTATTTAGCAATAGGGCGTATTACAAGGCATCAAACGAACAGTCCACCTGTCAGAAAGTTTTAGTCCTATTATATTGGAACTGTGCTGTTTTCAAAACTGGCAAATCATTGTATCCACAgccatttgaaaatatttaagagTAACTGTGTTAACTAGAGCTGCTTGAGGTGTTCTTGAGTAAGATCTGTAATATGAGCAAATATGATGTTTTTAGGGAATTTTATAGTACTGGGCAATTCCCCCCAGATTAAGTTAGTTATCTGAAATTACTTGGGCTGTGCACTTTCTTTGCTCAACTCTAAACCCACCTGCCTTTAAAACTATAATTCCTTCATTCATGGTGTTGATTAGTTAACAGTAAAATAAGCTCTCTTTCTTTGCTGGAAAACTCTTCATAAACAGGGAAGTGTATTGCTTTAAACTCGGAGCGTTCAGAGGAGGGTCCTACCTCACGCTGCTGActtgaaactatttaaaaaccCTGATCAAATGCCAAATAAACTATGCCAACAATCAACTATGAGGGGAATGCAGGAATGACAGTTTCACTTACAATCAGGATAGAGCTAATTACTTGTGAGATTCTCTGTGCATCATTCACTGCAGTATAGAGTGGAGGACTCTTTCCACTCGATGAGTGTATTTCAATTTACAGTTAACAGGCTTGTTTTCAGGTTGaatgaaaacatacagaaagagTGAAAGAATGAAAGACGTCAACTCTAATCATTTTTAAAGGCAGGTGGGGGCAAAATGCAGGGTCCTTGTTTTGACAGCGAAAGCCTGTAACtggtttcttttgttctttaaacTATAATAATGACAAACCCTTTCTGTATTTTGGGAGTCTGCATGGCCTAGTTCAATTACCTAATGTAGCCTGTGACAAGGTATGCCTTTATAACTAACGTTGAAATGCCATTCATGCAAACATCGTAGAGGAGAAATGCAGTCCAAAAAAGATAGTCATTATAATTGCCAAAATAATCGGTTTTGTCTGCTTTTCTTGCTGCAGTTGTTTGTGTGAGGTTGTGCTAGGAAACATCTGATAATATCCTGGTGACAGATACAGGAAAGCCACCTTCACTGCCAGCCCCCATACTGCACTCCCTACACTTGGACACTCTTACGCAGTCTCTGATGGACTGTCTAACTGACAGAGAACTTCAGACCTATTGGCCACAACTGCATGCAGCCGGCCTCATGGGAAGAGAAACCGTTGCCAAACTCAATTCATAAAGCCTGCCAAGAAAAAACTATCTTCACTTCATCCATGAAGCCAGCGTTATGCATTTGTCTTTTGGTTGTGGTCTAACACAGAGATCAGAGATCCCACAGGTTACATTGATGTGCCCTTCGTGTTGGTGCATTGCCTAAGCTATGGCCAGAGACACCCTTCACATGACAGGTGTTGCTGTGTCTGAAGGGTGTGAATGCAGCATTATAGATTAACCTGACTCATACATGCACATATAAGTATTCATGGCTTTTTGGTGCTTTCATGTATCTGTGTCCAAGAGGTGACGTTTGTTCAGAGGAAACAATTTGCCAAATGACTTAACATTCCAGATGAGTTTGAACTGAAATGCCTTGAAGGTAGCCCTGTGTTAAAGACTTGCAAATAAATAGTATTCACCTTTTAAAGATGATTTATATTCATGGATATGCAAACACTGGGGAATTTTGAATTCAAATTACCAAGTGTCCAAAAATAAAAGGATGTACAAACCTTTGATTCTGGAAAATGACATGTTTAGCAACCAAAATGTTTCGTGTTTTTCAAAACCAAATGCGTTATGTTTTTAAGCAAAggactttttatgtatttaatttattaatgagtTCCAAATTTGAATGCCAGCCATGTATTACAGCATCAAACTTAAAGATACTAAGGTCAATTGgacaaataagaaatacattgtaGATGTATCCCCTTACTTTCAATCACTTACCAGttttataaagaatatataaGTTGCAAAAACTTTCTAAATATTTGATGGCAAAAATATATgcttaaagataaaaaaaaaacatactcgGATGCTGAGGATCCATTGCAAAACATTCACCCTTTATGAACCTATTCGGTATATCCACTGAATAGGGTTGGCTGTCAGAGCTAGCAGTACAGCCCTCTTAGAAAACTTTAGGAAGAGCCAGCATGTGCTTTGCTCTGGTCAAAGGTAGTTCTGTAGTTGTTCAGGGAACTATGGACAAAAGGCAATAAAATCTCTGTTACGGTGAACTGATTTTATAGTGAACTGATGATTGCGCCATTAAACTTGGCCACATttattgtgtgtgcatgtgtgggtttgtttttagtttaattttaatgtcccagcttcctttttcttttcttttcttttcaccaGCAAAAAACGGTGGGGTCCTGGGATTGAGATAGGAAAAGCAGTGctaattaacaatttaaaaagtaactgGCAGTGGCTATACGCCTCAACTGTGCATGCCAGAGTCCTGTAAAATGATGTTCAAGGAGCATTCTTGTTAAGCATTGCCCATGAAGGGGGGCTTGTCTGGACATGGTCTGCATGTTTAATTCTATACACCATTGACTTTGTACCACTGGAATGTTTTGTAGGttataaaccattttattttgcattcctGAAGATCAAGCAAGGCCAGGCTCAATGGAACCTAAATCCATTTGCTCCCCATGCTCCCATTATTCCCTgagtttaaagaaatatatatagcatGTATTGTAGGCAAGGAGCCTAATTATGTCTCATTAGTAGCATTGTGTgaacagggggtgggggttattAATATAGCAGCCTGCTTTCATGACAGTACTGCAAAATGATGTTTTGGTTCTATTGAACTATTTAAATTTCATTCCAAGGGtaaacacagaacacagcccttttttggcttttttatttattcttccatTCAAGGCTCAGTCAGCAACTCTTAACCCCAGTCTGGGCATGTGCCCCGCCTGCGGTCCAATCAGCTTAATTTGCTGATGCTCTCGATGATCTCTTTCTTTAAATCTTGATTGCTCTCTTCTTTTGTATCGTGTTTTCAGATGgtttttttattatgtgtttCTGTCATGCCATACAAGTGCCAAAATTAcatgaacatgttttttctacTTCActgaggattttatttttactcattTGATTTTACCTGGGTCTGAGGAAGACGAAAAGGGACTGTATTCTCAGTTAGTACAGCAGGGATCCTCCACTTGACACTTTGTAATGTGCCCAAACTATTGTAGGAATTCCGTTAaggttttttaattgaagtttttttgttttgttttaggtttcttttttgtaaagaaaactTATCAATACAATGGTTTAcctatttaatttat

Function

GO: NA

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33838 lncRNA downstream 46669 35595430 ~ 35603175 (-) True G27023
TU33808 lncRNA downstream 97337 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 112208 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 118406 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 832924 34816694 ~ 34816920 (-) True G26952
TU33928 lncRNA upstream 337722 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 344005 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 361252 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 363998 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 436835 36102306 ~ 36149276 (-) True G27123
AMCG00007875 mRNA downstream 11924 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007874 mRNA downstream 55707 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007869 mRNA downstream 844966 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1606948 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1650106 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007877 mRNA upstream 52553 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 174682 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007879 mRNA upstream 190417 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007882 mRNA upstream 265771 35931242 ~ 35941429 (-) True AMCG00007882
AMCG00007883 mRNA upstream 337723 36003194 ~ 36010990 (-) True AMCG00007883
TU33771 other downstream 780037 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10018252 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10384893 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11381923 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11677179 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1574618 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1829440 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1902146 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1905486 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1907563 37573034 ~ 37588525 (-) True G27442

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026540 True 2467 mRNA 0.52 10 NC_007129.7 25073984 ~ 25177230 (-)