RNA id: AMCG00007877


Basic Information

Item Value
RNA id AMCG00007877
length 666
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00007877
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35718024 ~ 35735817 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTGAAAAATCAGAGGTGTCCCGACCGCAGCGCCGGGGACATCCAGCGAGAGGACAGCCAGAAGAAGTCTTCGTGCTTCTCCAACATCAAGATCTTTCTGGTGTCGGAATGCGCGCTGATGTTGGCGCAGGGCACCGTCGGGGCATACCTGGTCAGTGTTCTGACCACGCTGGAGCGGAGGTTCAACCTGCAGAGTGCCGACGTGGGCGTGATCGCCAGCAGCTTCGAGATCGGGAACCTGGCGCTCATCCTGTTTGTCAGCTACTTTGGCGCCAAGGGACACCGGCCGCGCCTGATTGGCTGCGGGGGCATTGTGATGGCGCTGGGCGCTCTCCTGTCTGCCCTGCCGGAGTTCCTCACCCACCAGTACGAGTACGAGGCCGGGGAGTTCTGGCGCGGGGAGGACGGCAGAGACGTGTGCTCCAACACCTCCATTAGGGCCTCGGGGAGCTCGGAGTCTGGCTTCATCTGTGGGAACAGGACTAACACCAACATGATGTACCTACTGCTGATTGGAGCCCAGGTTCTACTAGGGATTGGGGCCACACCTGTGCAGCCCCTGGGCGTCTCCTATATAGATGACCATGTGAAGAGGAAAGATTCCTCACTTTATATAGGGCTGCCAGGTGATCAGTGGGCAGATGCTCGGTACATGGcgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33838 lncRNA downstream 114849 35595430 ~ 35603175 (-) True G27023
TU33808 lncRNA downstream 165517 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 180388 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 186586 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 901104 34816694 ~ 34816920 (-) True G26952
TU33928 lncRNA upstream 267376 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 273659 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 290906 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 293652 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 366489 36102306 ~ 36149276 (-) True G27123
AMCG00007876 mRNA downstream 52553 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007875 mRNA downstream 80104 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007874 mRNA downstream 123887 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007869 mRNA downstream 913146 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1675128 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007880 mRNA upstream 104336 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007879 mRNA upstream 120071 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007882 mRNA upstream 195425 35931242 ~ 35941429 (-) True AMCG00007882
AMCG00007883 mRNA upstream 267377 36003194 ~ 36010990 (-) True AMCG00007883
AMCG00007886 mRNA upstream 302629 36038446 ~ 36060653 (-) True AMCG00007886
TU33771 other downstream 848217 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10086432 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10453073 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11450103 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11745359 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1504272 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1759094 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1831800 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1835140 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1837217 37573034 ~ 37588525 (-) True G27442

Expression Profile