RNA id: AMCG00007880


Basic Information

Item Value
RNA id AMCG00007880
length 849
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00007880
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35840153 ~ 35852765 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAATGTGTTTGTGCGGCTCCTTGGTCTGCCCGTGGTGAGCAGCACGTACGGGATCATCGAGAAGACCTACACCACCACCAAGCACACTCACCCGCTCATCTGCACAGTATGCGAGGTCTACGAGAAGGGGGCCAAGACTGCCACCAGCCTAGCGTACATTCAAAAGCAACCCAGGGCTGTTGGAGAATCAGTCGTTTGTGGTCAAAGCTGGTCTAAAGTGTCTTTTTCCTTTGTTGCTGTCAACAGTCTGGCCTGTAAGGGACTGGATCGGCTGGAGGAGAAGATCCCAGCCCTGCAGTACCCTCCAGAGAAGAAACTGAGTCCCATGGTTTGGCCCAAGTTTAGCCTAGGTTATGACCCTGTAAAATGCAGTTTGGTTCTTTACCCGCAGCTGGCATCGGGCATTGCTGAAGTGGTCACTTCCACAGTGCAGACCGCAAAGAATGGACTCNNNNNNNNNNTCAGCAGCACCACCGAGAGGGCTTTCACCCTGGTGCTGGGAGGCTACCAGCTGACCAAGAGCACCGTGAGCGACACTGTTGGCTACCTGCTCAGCAGCCGGCCGGTCCAGGTGGCGGAGGAAGGCGTGGACTCTGCGATTACCCTGACCGAGAGCCTGGTGAATTACATCCTCCCAGCCTCTCCAGACGAGAGAGACAAGGAGGCTTCACAAGGCCAAGGGTCTGATGTCACTCCAGCTGGGCAACAGCCGAGCAGCTTCAATAGACTGGGAGCCCTGGTTAGCACTATCTACAAACGTGCGTACGAGCAAACCACCGCTCAGCTACGGCGCACCAGGACTCAAGGACAGAAGCTGGTGTTCTGGGTACCTGGAGTGGCTCCAATG

Function

GO: NA

KEGG:

id description
K08768 PLIN1; perilipin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33838 lncRNA downstream 236978 35595430 ~ 35603175 (-) True G27023
TU33808 lncRNA downstream 287646 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 302517 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 308715 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 1023233 34816694 ~ 34816920 (-) True G26952
TU33928 lncRNA upstream 150428 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 156711 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 173958 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 176704 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 249541 36102306 ~ 36149276 (-) True G27123
AMCG00007877 mRNA downstream 104336 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007876 mRNA downstream 174682 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007875 mRNA downstream 202233 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007874 mRNA downstream 246016 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007869 mRNA downstream 1035275 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007879 mRNA upstream 3123 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007882 mRNA upstream 78477 35931242 ~ 35941429 (-) True AMCG00007882
AMCG00007883 mRNA upstream 150429 36003194 ~ 36010990 (-) True AMCG00007883
AMCG00007886 mRNA upstream 185681 36038446 ~ 36060653 (-) True AMCG00007886
AMCG00007885 mRNA upstream 269505 36122270 ~ 36142643 (-) True AMCG00007885
TU33771 other downstream 970346 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10208561 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10575202 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11572232 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11867488 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1387324 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1642146 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1714852 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1718192 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1720269 37573034 ~ 37588525 (-) True G27442

Expression Profile