RNA id: AMCG00007881


Basic Information

Item Value
RNA id AMCG00007881
length 2025
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00007881
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35860631 ~ 35931488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGTCTACATTAAGAAAGGCGCGGCGGAGATCCCCGCTCCCTCTGAGCACGGGGGCAGTGAGGACGAGGAGGACAGCTTTCTGAAGGACCCCGAGCAGCTGCGGGATCAACTGCCTCAGCCCTTCCGCATGATTGACAAGCTCTTGAACAAGCTGCTGGACAGGGCCTGGGACAGCATCTCGGAGAGAGAGGCAGCGAGACGTGCTGAGCAGTCGAGCAGGACATCTCCAGTTTTACAAGCAACAGGTGAAATTAAGCTTTCAGGGAGAGCCAACTGCCTTGCAGGATCTGAGGATGGGAATTATGTCTTTGTGGGTTATTCCAGAGGAATTTCTGTTATCAGCGCTTCCACTTACTCCACTGTCTCAACGTgggaggaggagaatgtggaaaTTACCTCTCTTTGTGCCATCTGCCTCGGAGGGACCATTTATCTCCTGGCCACAGTGGATGATATGGGTGTGTCACGACTATTCGCTTATTTTCCCAACTGCATCCTATTGATCAAAGTAATCAATGAAATTGATGATGTAAGTCGAAGGACCATCTGCACCAAATTTGAACTGTCCAAAAGTGGTGATTTTGCAGGTGTAATGTTAGAAGGCAACAGAGACTCTTGGCTAGAAGTCTATCAGTTTCCAAAAGATTCCTGGCTGAGGGAGCTGGAGCTTGAGCAGACTTCATCGCAAAAACAGGTTTCTGGAGATTTCAAGCTTTCTCCTTTTGGGATGATCATGAAAATCAAGCCACCAAAACTCCTGTCTGGCACATGTGTGAAAAGCCCATTTGAGGTTTTACAGAAGACTGGGGATGGTGTTGTCATTGGTTCTGGTCAAAATCACATGATAAGCTCGCAGCAGTGGGACAAACAAGAGGCAATATTTGCATCTGTGTACAAAAAATATCTGGATGCGTCTGAACCCAAGAAAGCCGAAGAAAAAACAAGgCAAGCTACTTTCCACTTCCTCCTGCCTGGAGGATTATCTCCGCTTTTTGGGGTAACAACAGGTGTGCCCATTGCTATCAGTGTGTGGTGGAGTGGAGATCATAATCTCTTTAAATATCTTCTACAAAGACCTGCAAAAGACAAACCAGGACTTCCTTTATCGGTCTTCGCAGTTCCAGGGGACAGTGACTTCAGCAACATGCTGTTTTTGGAATATCAGCCCATCAAAACAGAGGATGCTTTAATCCGAATGTCTCATTATAATCCCAGAATTCAGCTCCTTGTGAGCTGCAGGGATGGGGCATGTCACCTAGTTACTGGCGGCAGAGGAAAAGTTGCCAGTGTAATAATGGTAACAGAAAGGCCTTCAGATCAGGGATGTATCCCCTCTGCTATGATGGTGGTGCCCTTTCTGTTGAATGTGGTTGTTGTCACCTCTAGAAACGGCACATTTGCCCTCCAGGAGGTCACAGATGGGGCCACACTCTGCACTTTCTCTCTACCGGCTTCACACAGCGCAGCAGCTCCCTGGGATCCAATGGTGTTTTTGGAAGCACAAAACCAGACTCTGTTCGTAGGAGGTGATAGGAAAATGCCTCCTGATGAAATGTTGCAAAGAAGCAAAGCAGACAGTTCGCTCTTCATTTTCGACTTTCATCAGTCTCCATTAATTCAGCCTCACAAAGAAGCTCTCAAGAGTGCCTGGGCTCCCAAACACCCTGCATCTTTGGAAGAGAAATGTGAGCTATTTTTGCAAGCAAGGTTGCGGAGTCTGGAGGACAGAAACAGAGTCATGCAAGAGAACTGGACTCTGCTGCAGCAACACGCCACCTCCCTGTGCCACAAACAGACAAGCCGGGCAGCTGTCCAAAAGGCCCAGGGAATGCATGGCACAGTCGGAGCTCTGCTGCTCCACACTACCCCGCAGAACGTGGTCAAAACAGAACTCGCCTGCCCGTCCACCCCCAGAGCCGGGAATCTCTTCATGCGGAAGGAGGAGGCCGAGCAGCGAAAGGAGCCGGTCATGGTGGAGTTGTTCTCTGACTCTGCCAGCACAGTGGCACTGTGGCAGTAA

Function

GO: NA

KEGG:

id description
K24762 WDR93; WD repeat-containing protein 93

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33874 lncRNA upstream 17789 35807368 ~ 35842842 (+) True G27052
TU33840 lncRNA upstream 251994 35608423 ~ 35608637 (+) True G27025
TU33836 lncRNA upstream 257449 35595413 ~ 35603182 (+) True G27021
TU33809 lncRNA upstream 301072 35556145 ~ 35559559 (+) True G26998
TU33804 lncRNA upstream 308128 35550842 ~ 35552503 (+) True G26993
TU33921 lncRNA downstream 55813 35987301 ~ 36000934 (+) True G27089
TU33940 lncRNA downstream 97970 36029458 ~ 36030333 (+) True G27108
TU33944 lncRNA downstream 170808 36102296 ~ 36161392 (+) False G27111
TU33945 lncRNA downstream 170808 36102296 ~ 36182722 (+) True G27111
TU33975 lncRNA downstream 370009 36301497 ~ 36302841 (+) True AMCG00007889
AMCG00007878 mRNA upstream 45564 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 239914 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007872 mRNA upstream 311724 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 536741 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007870 mRNA upstream 631907 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007884 mRNA downstream 86199 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 353495 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007889 mRNA downstream 364730 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007892 mRNA downstream 473180 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 553498 36484986 ~ 36489446 (+) True AMCG00007896
TU33841 other upstream 239830 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6085596 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6856858 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7405924 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7765890 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 2213496 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2237082 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2424441 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2500557 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2761251 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile