RNA id: TU33928


Basic Information

Item Value
RNA id TU33928
length 419
lncRNA type sense_over
GC content 0.46
exon number 3
gene id AMCG00007883
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36003193 ~ 36010995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTGCTTCAGTGTTTGGCTATATTTCCTCACAAGgtgtctgttttcctttttctgggCAGTACTGGAGTGACTACTACCTCCAGTGGAATATCTCTGACTATCCTGGTGTGAAGAATGTCAGATTTCCTGATGGACAAATATGGAAGCCAGATGTTCTTCTCTATAATAGTGCTGATGAGAGATTTGATGCCACCTTTCACACCAATGTCCTGGTGAATTCCTCTGGCTATTGTCAGTACCTCCCACCAGGTATCTTCAAGAGCACTTGCTACATAGATGTGCGCTGGTTCCCCTTTGATGTGCAAAAGTGTGACCTCAAGTTTGGCTCCTGGACCTATGGTGGCTGGTCCCTTGATTTACAGATGCTGGAGGCTGATGTGACTGGATACATTGCCAATGGGGAATGGGACCTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33838 lncRNA downstream 400018 35595430 ~ 35603175 (-) True G27023
TU33808 lncRNA downstream 450686 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 465557 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 471755 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 1186273 34816694 ~ 34816920 (-) True G26952
TU33930 lncRNA upstream 3726 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 20973 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 23719 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 96556 36102306 ~ 36149276 (-) True G27123
TU34020 lncRNA upstream 356721 36362471 ~ 36364455 (-) True G27173
AMCG00007882 mRNA downstream 61764 35931242 ~ 35941429 (-) True AMCG00007882
AMCG00007879 mRNA downstream 143908 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007880 mRNA downstream 150428 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007877 mRNA downstream 267376 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007876 mRNA downstream 337722 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007886 mRNA upstream 32696 36038446 ~ 36060653 (-) True AMCG00007886
AMCG00007885 mRNA upstream 116520 36122270 ~ 36142643 (-) True AMCG00007885
AMCG00007887 mRNA upstream 174159 36179909 ~ 36267806 (-) True AMCG00007887
AMCG00007891 mRNA upstream 298656 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007890 mRNA upstream 301814 36307564 ~ 36314143 (-) True AMCG00007890
TU33771 other downstream 1133386 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10371601 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10738242 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11735272 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12030528 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1234339 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1489161 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1561867 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1565207 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1567284 37573034 ~ 37588525 (-) True G27442

Expression Profile