RNA id: AMCG00007885


Basic Information

Item Value
RNA id AMCG00007885
length 1077
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00007885
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36122270 ~ 36142643 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGCAGAGTCACATTTCAGTGGCCTGCAGGACACAAGTAGAGCTCTCAGCTTGGATGAGGCAGTCCTCCAGGTCCCTCAGAGGATAGAGCCCCAGCAGGACACGGCTGAGAGGGAGCCGGATGCGTCTGGTACCTGGGGGGCCTGGGGGCCATGGGCCGCATGTTCACGCTCCTGTGGAGGAGGGGTGAGGGCACAGACACGGCCCTGTCTGCCAGCCTACAACCCCCCTGCAGGAGGGTACCTTCACAGAGTGCAGCCCCAGCCGCTCCCCCCCGGCCGCGTAGTGTCGGCCCTGAGGCCCTCTGTGCCACTGCACCGTGACAGTAGCCGTCCACACCGCTCCAACGGCAGCCTGCCCCAGGGCACGGGCGAGCTGAGGGCGGGCAGGGCACAGGCTTCAAGGTTTGGCCGCAGAGGGAATACTGATAAACGGATAACTCCAGGAAACTTTGGGTATGGAAAGGTTCCTTACATTGTACCTCTGCAGACTGACACTGGACAGGAGTCAATCCCTGCCCCCCGTGCCCGCCGACAGCGCCAAGCCTCCCAGGTGTACGGCCGTAGGAGAGGGCAGGGCCAGGGCCAGGGTCAGGGCCAGAGCTACAGACAGCAAAACCTGCACCACAACTATGACACTGGACATAACTTCTACCATGGGCCTCAGGTCAGGACTCACCCGGGCAGGACGTCCATTTACCAGCCAACTCAGAGCATCTATCCTGACAGTGAGCCATCTGTCCACCTTCCTCCTCCGGTCAGACCTCCCAGCCTTGGGGCCGCCTCCATATCATGTGTGGGCGCCCACAAGCAGTACAAGATATGTAACACAAATGTCTGTCCCTCAACCAGCCGTAATATCCGTGAAGTACAGTGTGCTTCGTACAACAACCAACCCTTCATGGGCAGACTCTACGAATGGGAGCCGTTCACTGAGGTGCGGGGGGACCAGCGCTGTGAGCTGAATTGCCGGGCAATTGGCTACCGCTTCTACGTGCGACAGGCAGACACAGTCATCGATGGGACACCATGTGACCACAATGACACCTTCATCTGCGTGGCTGGCCAGTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33941 lncRNA downstream 91958 36029469 ~ 36030312 (-) True G27109
TU33939 lncRNA downstream 95287 36026723 ~ 36026983 (-) True G27107
TU33930 lncRNA downstream 111275 36009476 ~ 36010995 (-) False AMCG00007883
TU33928 lncRNA downstream 116520 36003193 ~ 36005750 (-) False AMCG00007883
TU33838 lncRNA downstream 519095 35595430 ~ 35603175 (-) True G27023
TU34020 lncRNA upstream 219828 36362471 ~ 36364455 (-) True G27173
TU34046 lncRNA upstream 325443 36468086 ~ 36468452 (-) True G27196
TU34047 lncRNA upstream 348553 36491196 ~ 36491846 (-) True G27197
TU34097 lncRNA upstream 601425 36744068 ~ 36745866 (-) True G27243
TU34106 lncRNA upstream 617702 36760345 ~ 36760589 (-) True G27252
AMCG00007886 mRNA downstream 61617 36038446 ~ 36060653 (-) True AMCG00007886
AMCG00007883 mRNA downstream 111280 36003194 ~ 36010990 (-) True AMCG00007883
AMCG00007882 mRNA downstream 180841 35931242 ~ 35941429 (-) True AMCG00007882
AMCG00007879 mRNA downstream 262985 35855888 ~ 35859285 (-) True AMCG00007879
AMCG00007880 mRNA downstream 269505 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007887 mRNA upstream 37266 36179909 ~ 36267806 (-) True AMCG00007887
AMCG00007891 mRNA upstream 161763 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007890 mRNA upstream 164921 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007893 mRNA upstream 288504 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007901 mRNA upstream 587678 36730321 ~ 36743469 (-) True AMCG00007901
TU33771 other downstream 1252463 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10490678 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10857319 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11854349 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12149605 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1097446 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1352268 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1424974 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1428314 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1430391 37573034 ~ 37588525 (-) True G27442

Expression Profile