RNA id: AMCG00007888


Basic Information

Item Value
RNA id AMCG00007888
length 5816
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00007888
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36284983 ~ 36294189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATACTTCAgcacatacttttattttaagtatgatgtttttacaaaacaaaaacaaaacaaatccaattttGGAATAATGTGCAGATATATAGGAAATTGATCACAAAACCAGTCACAcattacaataatgggcaccgattcttaattaatttatgtatttataccacaggaataacacatgcatacctCATTTAATTCACCCgtgttctgctgttaatcacatatATAAAAAGGTGAACAATGTGTCAAGACAAAGATGAAAAATGACAGGCCTGATGGTACAGCAGGAGAGAATTTTGAGCAAGTAACATTAGGGAGCAATTTACTCAAGGATTTCCTTGTTACATCACTAATCTGACAAAAATGCCATTGGGTCTTCAAATTCAATCATTTAGAACCAATTAAAAAGGATTCAAGTGCATGCAGAAGCTTGTGAATTATACCCTATTTGGATGGTGATGTTTAGACAGCTAGGACAGCATGTTGTGAAACAGGCGAGGGCAGAACATACACGCAGCAGATGAAGTGCTAACCGTCTTCTACACAGCGATCACAGGTGCTTGGAGCATTGCTCCCAATGGTATCCTAAGGTTAACCCAGATGGCTTGCCATCTCATCGAGTTTCAAAAACATCACTTCTGGCCagtgatatgtttttttttttttttttttatattgtttgttttgtgctaaTCACAGCAGTGGAATTACCCTAACACTCATCTCTGTTTTAATCGCAGAAAAATCAGCGTCTGTCACTCGGCCTTGTGCTCAGTACTGCGCCCATCTGCACTGATGCTGCAGACAAGGTCTTCTTACTCACACAGAACTGAAGGCAAGTGGGAAATTAGGGCACTGAGCCCACAAATCATGATCTTAACAAATTAGTTAGTTTCTCAGTGTTTCTCATCTGTGATCTCTGTAGCCATCCACATGGGAGTGTGATTTAACTAGGAGATATCcaccttttgaaaaataaacagataatcACAAGACACAAGACaagaaaaaataccaaaatgatTATCAGTTTGGTCAATGGAAAGATCAGAATAAGATATTAGGATATACTCAGTTATATAATGATGCTATACTGTATTTAGTTACTTCTTAAATTGTAgctaaaatgtatacatatgttagttaatataataactaaatctacatttaaatgtaatttcatatgCAAAAAGGAAATGTCCCCCCAAATTCCATCCTAGCCAGAGCACACCTTTGAAACTCTTTATGGGACTGATCTTATAGAGTGGGACAGAAATctattaatattgaataatcACTAGAAAACAGATTCAACAACAAAGCaagctctctgtctgtctcgcAGTGAACTTTAATTTAGGAGGCAGTAGAACTGACAGCTCATGAAAGCTCTGGGAATCCATTTGTCACAACATTCCCAACAACAAAAAGACCTCGAGTAGTATATCATGTTCAGAATGAAGAGTTTTCTTTAGCTTTTGAGCAAAGACTTGGATATTTTCAGAATGAAATAGTGGAACCGGGCCAGAGTGATTAAATGTCACTCATTAAATGTGAGttaattcaatacattaaatacaatatattatccATGACTGtagaattaatttacaaaagacACAGCTGAGGGCATCTAAATGATTggaaacattgtatttatgtcATTTAGATAAACAAGCTGCACtgttatacaattttaaaaaatagcacACTAAATCCCATTGTAAGCTATTTTAAAGCACAAGATGACTAATCTAAACAACCAGTCTGTTTTGCAAAGTTGCTCTTCGGATAATAACATAGAAACATTTAAAGAGGACAAACATGTAACTTTCTGCAAATGAAAACTTTATTAAAGGGGAGGCTTTTTTGTTTAGGTATCCAGAATTTCGTGCCATGCACAtgattttgccttttttaaatagacACACTTTTTGCATGATGCAGGGAGTTTTGAGCATAAACATCTATTACAGCTCAGACAATAAGACACGATGTGCAATACTAAGCAAGCTTTGAAATCCCAGACTTAAATTCAGTCACTGTTATTTCACCTGCTGCATCGGCAAACTGTGTCCACAGCCAGGCCTTGTATCAATAGGAACAGTTCACCCTGCTGCTTTACACTGTATGCTGCCCCATACCTCACACATCAATTAGACTTGTGCAACGTAATTAAGTGCGGGTTTCTCAAAGTGAATCACGCACCTGACTGAGCAAAGGCATTACCTCATACAGTGCTTAATTGCAGTTTTTTGTTGACACGTTGGGAATAGCCAGTCTCAGTTTAGCATGCAGCATAGATTGTCTTACAAAATTACATTAGcatgttttctttacagttCCCTTTTATAATTTACAACAATACACTTTCTTTATGTGTggacatacaaaatacaatgttgGAAAATGTGAGAggaaaatgtttcacaattaGAATACAACAattgtactactactaccaccactacaGTTGCTAACAAGTCCTTTTAGCTTTGGCATAGCCTACAGCTTTTGTTAATTAAGACCCTTGTTTCCAGGCATGCCAATTAAATCGAGCACCGTGGCTATCATCACCAATTGCACAACAGGTAATGCATCTATGATGTGTATCTATGATGGAATCGCGAATTCGAATCTATTTTTAGTTCTGCAAACCAGTCAAATCCCTTCGCAATCCTATTATTCAATTTGCAAGTCTAAATCACACTATGTGGGTCGGACACCATGATTGGCGGGTTGCTCTCTTCTCATTGTTTTATTGCACCATCACTTAAAAACGTGGGTTTCCTCactaatttataaatattgcgTTGAGGGCGAAAAGGAGGGCCCATCATTTCCCTGAGGTGAAGACGCAAGATGCACGCTTTGGTGAATGCGTTTCTCCGCTGTCTGTTCCTATTGCTCCCCCCCCCGTGGTTTCAGCTCGGCTTTTGCTGGTGGGTTGGGGATGAGTGCGGAAAGACGCTGTGGCCCAATCCCAGGGCTCGTTTCAAAGGGAGAAAGCCTCTTGCACATCAGGAAGTAACACAAGACGCGGCCATCCCCTCCTCTTCCCCTCCTGCTCGGTGCGCCTCTCCGGCAGCAGCCTCACCGCCGCCCCCGGGATCTCCTTTGCGGAGAATCTGGGAGCTCTGGTCGGCTTTGGAGCGCAACTTCGGGGCTCCCTTCTCGTTGCCCCAGCGCCTGTTCCCCAAGCGTTGGGCTGCACCCGCAAAACGGGCGTGTGAGCCGACGGGTGCCAGTGCCGGACGAGACGTGTGCGTCTCTGAACAGGAGCCGAGCGCAACAGTGTTACAGCAAGAGGAAGACGCAGACCCAGCGACGCTCCCACAGGCAGGCACCGGCAGCTCGATGGAGGTGCCCGGCTTCTCCGATCCCGCGTCGGATTCAGTCGCGGTTCGGGTCGCGGAGGCGGCCACTGACACGGGCTTTGATCTGGAGGAGCGGCTGCTGCAGGAGATGGGGACCCAGATCCAGATCCGAGTGGCGATCCAGGCGGCGGAGGACGAGGACCCGGAATGCGAATTGACCCTAGATCACCTGGACTTCCGAGGGGGCAGTTGCAGTGAGGATGATCTCGGGAGACACGATAAATCCAGTGGGGCTGGAACCAGTGGAGGGGAGCATGAGGAGCAGAGCTGGCAGCCCCCAGACCCTGAGCTGACTCAGAAACTCATCACTCAGATCGAATACTACTTGTCAGATGAGAACCTGGAGCGCGATGCCTTCTTGCTTAAACACGTCCGACGCAACAAGCTGGGGTTTGTCAGCGTCAAACTGCTTACTTCCTTCAAAAAGGTAAAACACCTGACGAGAGACTGGCGAACAACGGCCTACGCGCTTCGGCACTCTGAGCTGCTGGAACTGAACGAGGAGGGAAGAAAAGTGCGTCGCAAGGCAGCAGTGCCAGTCTTTGCCAGTGAGAACCTTCCCAGCCGCATGCTGCTGGTCAGTGAGCTGCACCTGTGGCCTGATCTGTGCCCTTCCCTGGAGAGCGAGGGGAGCTCTGCGGCCCATCAAGAGCGGCTGATGGAGCTCCTCCTCAAAGCCTTCGGGGTGTATGGAGTGATTTCCTCGGTGCGAATTCTCAAGCCAGGCAAGGACCTGCCTCCTGACCTGAAGAAGCTGAGCGGCCGCTATTCTCAGCTTGGCACGGTCGAGTGTGCAATCGTGGAGTTTGAAGAGATCGAGGCTGCTGTTAAGGCTCACGAGGTGATGGCTGGTGAAGAAGAGGGGGGAAGCCTCACAGGGGTCAAGGTGGTCCTGATCGGGACCAAGCCTCCCAAGAAGAAAATCCCCAAGGACCGCCAGCGGGAGGACGGGGGCCAGCGCAAGAGCCGTTCTCTCAACAGCAGAGTGCGGGAGCTGCAGTACCTGGTCGACGACTCGGCCTGCAGTTCCTCAGAAACGGAGAGCAACCCCACCTCTCCCCGGCTGACCCGTAAAACTCGACCGGGCAACAAGCTGAGCCCAGTTGGGGGGGGTGGATACCAACAGAACAACCACCTCAGTCCTGGTGTGTCTCCCCGCTCCAGCCCCTGGAACAGTCCCCGCACCAGCCCCTCTGCCCAGCGCAAGTCCCCACATTCCCGCAAGTCCCCTCTGGTCAGCGAGGGCAGGCTGAGCCCCGAGCCCAGCCGCAAGTGGGCGGACTACTCCTCGGACAGCAGCCTGACTCCCTCTGGCAGTCCCTGGGTACAGCGCCGTAGACAGGTAGCCTCACAGGAGAGCAGCCCTGTTGGGAGCCCGATGCTTGGCCGCAAGATCCAGAATGCTGATGGGCTTCCCCTTGGGGTGGTACGACTCCCTCGAGGGCCTGATGGGACTAGGGGCTTCCACAGTGCTTTGGCTGAGGAGAGGAGCAAGCCCGTATCATGTGCAACCTGATTTAAGGAGGAAGGGAGTGGCGTTTTCTCACGCCAAAAATTGCCATTGCAGAGATCAATACTTCATCGTAGGAGCTTGGAAACTTtgctttgtaatttaatttggatGCCATATTTTTGGCTTTTCCTACATGTTTGGTACATTTTTtgtaagttttttatttttatttttatttaagcagtTAGGTGAAACTgaaaaggcatttatttttcttcatttaagaCCATGCGTTTCCTAAAAGTGACCattttgtatgtgaaatattgtAAAGGTAGACCGTTGCTAGTGAAATTattccagtttaatttaatgtaaaattgcCCACTTTAATGTCAACACCAGAGAACAAGTTGTAAATGGTATTGTTTTCATACGGTTTGTGAGGTTTGCATTCCAAAAGTTTTGGACTTCATGTAGAAATCTGAACAATTTGGCCGATACCTTGTAAAGGTATAATGTGCAAATAAGCTATAATTGTGGTCCACAGCCCACAGATTTGGCCTGAAAGGGTGTTGCTGGTAATCTCTATTTTGCATGCAATACATCCAGGTTAAGGTTGAGGGTTGTTGCTATGGACTCCTCCCCCTCACTTGTAATATTGTAATCTGCCTTAATATTGAATATCAAGAAATGTCctttcatgtgtgttttttttttttttaacttgttttattgGTTTTTGCCCTCCAGCCCTTTTATGATCAGGTGGTTTTAAAAGCTGGCTTTTAGGGGGCTGTACTTCATGTAGACTTTGAATGGATGTGTAAGGGATCAGAGGGTCAATGTAGGAACTCTCCCCTGACTTGTGGGCAAGGTTCATCCAAGCTCCCTCCTTATTTGAGAGGTTTTGCACATTCTGggattataaaatgtatattgtatgtccccatgtacaaaataaagcactgaaatGGCATTA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33945 lncRNA upstream 102261 36102296 ~ 36182722 (+) True G27111
TU33944 lncRNA upstream 123591 36102296 ~ 36161392 (+) False G27111
TU33940 lncRNA upstream 254650 36029458 ~ 36030333 (+) True G27108
TU33921 lncRNA upstream 284049 35987301 ~ 36000934 (+) True G27089
TU33907 lncRNA upstream 381724 35903044 ~ 35903259 (+) True G27079
TU33975 lncRNA downstream 7308 36301497 ~ 36302841 (+) True AMCG00007889
TU33980 lncRNA downstream 11785 36305974 ~ 36306877 (+) True G27139
TU33999 lncRNA downstream 35231 36329420 ~ 36390820 (+) True G27154
TU34035 lncRNA downstream 135217 36429406 ~ 36429931 (+) True G27187
TU34069 lncRNA downstream 391121 36685310 ~ 36727117 (+) True G27216
AMCG00007884 mRNA upstream 265299 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007881 mRNA upstream 353495 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007878 mRNA upstream 469916 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 664266 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007872 mRNA upstream 736076 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007889 mRNA downstream 2029 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007892 mRNA downstream 110479 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 190797 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007895 mRNA downstream 233176 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007894 mRNA downstream 246394 36540583 ~ 36569423 (+) True AMCG00007894
TU33841 other upstream 664182 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6509948 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7281210 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7830276 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8190242 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1850795 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1874381 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2061740 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2137856 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2398550 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile