RNA id: AMCG00007889


Basic Information

Item Value
RNA id AMCG00007889
length 462
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00007889
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36296218 ~ 36302841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCACCTGTGCCATGCGACCAACCAGGTTCCTACTCAGAAAGAGGAGACAGAACTGCTCTTGACCCTCCCCCCTGACAGGATTGGCCACGGCACCTTCCTGCACTCGGATGTGGGCGGGTCCCAGGCGCTGGTGGATTCAGTGAGAAAGGGAAACATCCCATTGGAACTCTGCTTGACTTCCAATGTCAAAGGCCAGACTGTTGCATCCTACGAGAAGCATCACTTCCCATACTGGTATCGGCTCGACCACCCCTGTGTCTTGTGTGCGGATGATAAGGGAGTCTTCAGCACTGACCTTTCCCAGGAGTACCAGCTGGCTGCTACCACGTTTGGCCTGAGCCAAGAGGCTGTGTGGTCTCTGTCTGAACAGGCCATTGATCACAGCTTTGCACCCTATTCCCTCAAGCAGGACCTGAGGCAGAGATGGGCTGATCTGCGACCCCATGTGCTCAACAAA

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0019239 deaminase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33945 lncRNA upstream 113496 36102296 ~ 36182722 (+) True G27111
TU33944 lncRNA upstream 134826 36102296 ~ 36161392 (+) False G27111
TU33940 lncRNA upstream 265885 36029458 ~ 36030333 (+) True G27108
TU33921 lncRNA upstream 295284 35987301 ~ 36000934 (+) True G27089
TU33907 lncRNA upstream 392959 35903044 ~ 35903259 (+) True G27079
TU33980 lncRNA downstream 3163 36305974 ~ 36306877 (+) True G27139
TU33999 lncRNA downstream 26609 36329420 ~ 36390820 (+) True G27154
TU34035 lncRNA downstream 126595 36429406 ~ 36429931 (+) True G27187
TU34069 lncRNA downstream 382499 36685310 ~ 36727117 (+) True G27216
TU34107 lncRNA downstream 464842 36767653 ~ 36767939 (+) True G27253
AMCG00007888 mRNA upstream 2029 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007884 mRNA upstream 276534 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007881 mRNA upstream 364730 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007878 mRNA upstream 481151 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 675501 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007892 mRNA downstream 101857 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 182175 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007895 mRNA downstream 224554 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007894 mRNA downstream 237772 36540583 ~ 36569423 (+) True AMCG00007894
AMCG00007897 mRNA downstream 320242 36623053 ~ 36644439 (+) True AMCG00007897
TU33841 other upstream 675417 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6521183 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7292445 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7841511 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8201477 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1842173 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1865759 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2053118 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2129234 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2389928 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile