RNA id: AMCG00007894


Basic Information

Item Value
RNA id AMCG00007894
length 7544
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00007894
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36540583 ~ 36569423 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGACTGAGACGCGAGAAGCAGGCTTTATTTAAACCGCGGCTTCAGACTCTGAAAACACACCGAAAGTAATTGATCTCAAGGCAAATTTAATCcttacacctttttttttttctgggaacGACCAacagCTTAGCCCAGGATGGCGGCAGACTGGCTGGGGAGTCTGGTGTCGATAAACTGTGGGGTCACTCTGGGTGTGTACCAGGGTGAGGTGTCAGCAGTGGATCAGGCCAGCCAGACCATCTCTCTAAAACAACCGTTCCACAATGGCATCAAGTGCCCAGTGCCTGAAGTCACTTTCAGTGCCATGGACATAAAGGAGCTGAAGATCCTGGAGATCCCTGGCAGCGGTCAAGGGGGGCACCCTGACTTTAGCTCTGTGGGCCACAATGGAAGGAGCGCCAAGGGACCAGTGGTGCCAAGCAGTGCACCCATGGCTGTGCCTCGCAAAGGTGAGCTGAGAGTGCAGGAGGGGTTCAACTCGCCACAACAGTTTTCCAAAAGCTATGGGGAGCGCCACCTCGAGGTGACCAGCCAGGCCAAAGGCTTTCGCCGCCGGCATAACTCCTGTGAGTATCGTCGGTGCACTGCGGGGGGGTGGGAGGCATGCTTAGAGAGGAGGGGGGCGACGCCAAAGAAGAACGGCCTGAAGAACGGGCAGATGAAGACTAAAGATGATGAGTGCTTTGGGGATGGAATGGAGGAGAGCCTGGACACAGACTTTGACTTCGAGGGCAACCTGGCTCTCTTCGACAAGGCCGCCGTCTTCTCGCAGATCGAGATCTCAGAACGTCGGAACGGGGCGCGGTCCCGCGGAACCCCCAACGAGCGCACGCCCTCCCGTTACCGGCACGATGAGAACATCCTGGAGGCCGAGCCAATTATCTACCGGCAAATAACGGTACCTCAGCATGGTGGCAAGGAGTACTGCACAGACTCAGGCCTGGTGGTGCCCAGTGTACcctttgaaatgcacaaaagGCTGATTTCCGTGGCGGAGCGGTATGGACTGAGCCTGGAGCGCAGGCTGGAGATGGCAGGCGTGTGTGCCAGTCAGATGGCACTGACTCTGCTCGGAGGACCCAACAGGCTGACCCCTAAAAATGTCCACCAGCGACCCACCGTGGCCTTGCTGTGTGGCCCTCATGTCCAGGGTGCTCAGGGCATCAGCTGTGGCCGCCATCTGGCCAACCATGAGGTCCACATCATCCTCTTCCTGCCCAATTTTGTCAAGATGCTGGAGTCCATCACAAATGAACTCACGCTCTTTGGCAAGACTGATGGCAAGCAGGTCTCCAGCGTCAAAGATCTGCCGGACAGCCCGGTCGACCTGGTGATAAACTGCCTGGATTGCCATGAGAATGCCTTCCTGCGAGATCAGCAGTGGTACCGGGCAGCTGTGGACTGGGCCAACCAGAACCGGGCCCCCGTGCTGAGCATCGACCCGCCGGTGAGCTCCCGGGAGCTGGCTGTGGAGGCCAAGTGGTCGCTTTGTCTGGGGCTCCCCCTGCCCCTGGCTGAGGGGGCGGGCCGGCTGTATCTGTGTGACATTGGCATCCCGCGCCAAGTCTTCCAGGAAGTGGGCATCAACTACCATTCTCCCTTCGGCTGCAAGTTCGTCATCCCACTCCACAGCACCTAGCATCTGAGTTGACACCGATCGAACTCTTCCCAGAGCCAGGATAGGGAAAGCATCCTTAAAAttgaaggaaaatgttttaaagagcttgaatgttgcattttgtgtgCGGGGTGTTCCCTTGCCTTTGTTGCCAGCTTTCCTGGGGGTGGTGTGCTGGGGAGGGCTTTAAGAAAGCGTTCTGTGggaaagttttttgtttctcctgaACTCTCAGGTTTTGCACTGACATTCCATGAGGTGCAGCCAAAGGACAGTAGATCCTGAAtgattctgtgtgtgtttgagaaggACTGTGTGTTTGGCAGAGTCCATTTACAGTGCATTAAAGCAGGGAAGGTGAGTGAATGAACATTTCcctggagaaagaaagaaaaaaagaaaagagcatTGTTCATGTTGTTCGTGTTGAATTTGAAAATGatctttttgtcattttgtagtTACTGTTGTCACTCTTATGAGATGACAGCGCCTGGCCAAATGAACAGGTCATTGACCCATGTGTCACATTCAGatgtgttcttgtttgtttatcctTAACTGCCAGGTGAGCAAAGGAACGAGAGGTATTTTCACCGCAcagcacaattgtttttttttgttcttctattAAGAATGGAAAATGGAGCATATTGAACGgagtattaaatataaaaagagggCAATCTGTAGTTTGCTTGGGAGCTGAATGTGGTCAGTGCACTCCATACTGGAGTGTGTGACCATCCTGGTGTGGGGTCAGTGTATATTTATGATCCTAAATTTGTTAGTTTCCGAAAATTGGGACTTGCAGACActagtttttatttgtgttttagatTTAAGCTAATGCATCCAATTTTGGGACAGAAGCATTTTACAACCAACAAGGTTTGTTACGGAATTAAACTCGGTCAATGCTCAAAAAATGGTCTGGCGTAAACATTCCCACCGAGAAAAGAATTGCAGCGGGAAACCAATTTCACagacattttggaaaatgtaacattatcattgattgattgaaatagATCgatattttcaattttgtgtACACGTTATCTACAATTGTTTTCACATACCTATTTCTCAATGTTGAAAATGTCTTATGATAAGTACATTGAAAATGACATGGTAAAAAGTATAGACAAATACATGGAGTTTTGTTCAGATTTACTTTACAAAGACCAAGTTAATGATGATACTACAGCCCTAAATATTAAATacccccccaaataaaaacttcatttttttgttctcctGCCCAACATTTTAGTATTGCTTTATTCTTACTGGTATTTCATTTAGTCCTAATTACACAAAGTGTCAATTCTAGTGAAGACCTTAAATTGTAATCTTGGTCAgatatattcacattttaaactgatCAAAGGGgggcatttacattttttctgtgaAGGCATAGTGATTACAACAAAATATTCCATATTACTGTTGAGTCATAGTCTTCAGGTCAGcttttcaattttcttagattttcCTGAATACTGATTCAGGATGTCACAATCTGGACCAAGTGAACACATTATAGTCTCTCATCCCAAATGATCACCCTTTATAGAACATGGTAGATTTAAATCtctaatttcagttttttttacaaatgtaccATTCAAACCATATACATGTTGAATAGATCTAAATGTGTACCAACGTATTGAATTCAGTTTTGTAAGATGAAATTTCAGAATTCTAGCtttcataaatgcatttttaccaTGTTGCGGTGTTCATTTGTTGAAAACAAGGAATTTGTGAACATCAACATCAAAAGGTTGGCTAATTTAAAGTATGGTAAAGTTAGATGCAATTAAAGACCGAAGTCCTGATTTTctgaagttaaaaaatattttttcaaaagttaCTGTGCCATACAATTTTCAAgcctcttattttatttttatttttttgtcatgtttaaCTGGGAAGACTGAGACACATACTAGTTttgacaaaatattttctttgcatttcccCCTCAAAATGGAAATCGTTAGTCTATACTAGTGCCggtgattgttttttgtgtgtcatGTTTGGGGACCAAAGCTCAATGGGGGAGTAAGTGAACACGAGATCCAAATTATGTTTCAATATGAAATGAAGTTGATCTCATTATCCCAGGGCCAGGTATGTTACAGATTGTCACAATCGTGGCTCAAACATGGCTATGTGTTGTTGATCTGGTAATTTGTTTCAGGAAGTCAGTCCTATTTCCTGTTCCTAAAAGgtcaaatgtattgtattgagTGGTTTTAGTGGAATCAATACTTCAATACACTATAGAGTGCTTTACCTTTGTGCAGACGTTAAAAACATTATCAGGTACTTTTACAGTGTGACCATGTCTTTATATATTAGGTTTGTTTTAACTAAAGTTTAATATAGGACTGTAAACTCCACATGAGATCGGCTGGTCTGACATGATGTAGGTTTATTTGCAATTCTATCGGGATCTAGGAGATTTTATAAGAACTTGTTTCTGAAGAAGCCCAATCTTTTCTTCAGTGAAGAGGATGTTTTGTAGCAGTAATCATTTTatatgtgatttttgttttacatggaGATCTTTTGTGTATGTGATTTACGAACTATAAAAACCATGGTTACTCTTCATTCACATTCAATTAGTGGACACAGTAAGCTGGTGGTGGCTTACCCTGCTACTGGTGTACTACAACTCTTGAAATAATCTGTTACCGAATACACTGAGCACACGGGTAATTTTGAAATAAGTCCAATAACTGAATCGGTCAAGTAGTTGACAGTTTAgattaaaccaaaaacaacactggTTCTCCGAGACCAGGCTGTGTTAAGATCCTTTTGCAAATCTTCATTGCTGAATGAAATGTTTAGTTTGTAGAGATTTGAGGAAGATTATCATTCAGAGTTGTGCAGAAACATCAAAGCACATTTTCCCTTACTGCAAAAAATGCCTAAGTGAAAGAAGGCTCAACGTACGGAATGTGACAGTTTATTGtaattacatattgtattgcatgagggaaaaagttattttttcacaaaagtTGACGATCTGCAACTCTGTACAGGTTGCTATTTTCAGTATATGGAGAGCAGGgtttcagtactgtacatgATATTTGcctgaaatatgaatatgctgAATTATGGATTGTCATATTTAACCACAAAACCAAATGAACACCCATAGGCTAGGTTAGACTTTGGTTctcttgtaattgttttattaactcCAAACAGTGTGGGAGTGGGATTGGCTGTAATTTTGTCAGAGGTTATAATGGGTCCATCTGCATCTTTGACTGGTGTGTGTATACTAGATTGAACAGCATCCCATTTCTTCCAAGAAATCCAGTACAGTTCTGTGGGATGACTTAAGAAGGTTTTGGTTCCAGTCCAGatatttttcttgcatttgGAAATATTCATTACAGTCAAGATGTCTTCGTTATTGTGACAAAGTTAGTTTCTTCAGAGGAAGGATGCATCGTCTTTGTCCTGTGCACGCTCTGTCGTGTAGGGATGTACAAGGATGTTTGGTCTCAGGGAGGTTTAGATAATACTGCAGTGCACTGGTTAAATTCTAATTATCttgcaaaacacatttccattcaTAAGCAAAGCTATTTTGTggatatatatttcactttgtaaattatatatattatttgtgctttgcATGTGTGAACTTAGTGAATGAATGGGATTATTGTGCATACTACAATTATGTGAATATTATAGTAGCCACTGCGTTATCCCCTCAGaaattataaagtatatatagaGAAATGGAACAAGCCTCCCTCTAGTAATATAAGATACTTCACAAAGAATGATATGGCCAGCTAGTGCagattgtaatgtaatattttgcacAAATGTATACTGCACACCTTAATCAAACTTATTTTTTGACAAAGACCTGTGTGAGATGCCATCTGCTGGGGGTGACACAGTAGTTCAAGAAGAATAGCATTGAAATAgttgtatgtattgtgtgtgtgtgtgtgtaaatgtgtacagtatatatattcacacattgtgtgtatttttaaaaaaccCAGTTAACTTTCACACTTGCCTAATAGAGATGCAATCCAACTCTTAAACACGGCCCCACGCTTGGCCTTGGGCACTGTGTAAGAACTGACATGCATGATAAAGTGGAAGTCTGATTATTCTGGCATAAAAGTGATGTGGAAAGAGCTTAACAATTCCACTGTGTTATCATTTCATGGCAAGACTCTGTATCTCTTGCCCTATTAGCTCAGCACGCTAATACGCACTGGAAGAATTGTTCTGTGCTTTGTCCAGTTTTGGTTATCGATCgcaattgtacatttttactcTTGAATTTATCTACTTCTGAACTTCTGATTATTTGCCTCCCATTCAAGCTTTTGGTGTAGCTCTGCTTACAAAGTGTGTGAGGACCAGTGTGTCATGGTTTTTGGACACATTGGAGGTGTTTTAGTCCTCTGAGAATCCTAGCTCATGAGCTGCAGTTTCCTTGCTCTGTTTTGATTTACTGTTAGGGTGTTTTTACTCATATCCTAACACTGAAGAGTGGAGAAGTGGAAGTAGaacaatatgtgttttttattgtaattatgtcATTCTTTATGTGCAGCTATCCAAAAGAAGCAGTCTAAACAAAAGTAGTCACGCCCATGTGCAGGGATCAGGGTGAGGGAGTTGTCTTTTAAAATTTAGGAAAATTATGAACCAGATATATTTTGGATCTGATTTGTGTACTGCGGATTTATTAatcttcatatttgttttattctgggCTGCAGTTGTCTTTTCAGGCTTAGTTtcatcttgttttttgtttgttctcttatTCCAAACTTGAACAACAGAATGCTGTCTGCTCtatctggggaaaaaaaaaaacggctaTTGTTCAGTGCATTTTTCTTAGTTGATTATATTTGCCTGTTatggaaataaaaactgttcCTTGAAACTGATCTAGGTGGATCCTCTTTCTTCACTGTGTAGGGAAAGCAATGCCATGTTCCAGTAAACTGCTGTGGTTGCGTTGGGGAACAATAAGAACCTTCCACTCCTGAATAGTGTTTGGTGTAACACACGTGTAACCTAATGATCTGAAGAGGTGTACGCTGTGAATCAGGTGTGTATGTCTGGGGTCATGCGACAGATTTTCCAATGGAAATGCTTTAAATGCTGTGTGATACCTTGTGAATTCATTTCTAAAAAGCCCAGTTAACAGTATAGTGTATTACATTGTGTGGATATTTCTGGGAAATGTTTGACTTTCTCTGGCCGTAACCTTGTGCCTTTGACACAAATCTGCTGCTCAAATAAACATAACAGACATAAACAGTCCTCATAAAGGCAAGAAGAAAACTAGGTTCTGGGACATTAGGGGGGGGGGTATGCtgtttgaatattaaaattatgtattaatattcatGGGGGTTTGACAAGATGTATAACTTGAACTTTCAGGTGCTAATTTTCATTAGGTTGGATTCCAGAACATAAAGGCGGCACTGTCTTTATAAGCttttcgtttttgttttgtgtgaacGGAGTCAATTATACCAATGGCCACAAGATGGCACTGCTAGGCCTTTATTAGTTTGTGTTGTTTAACAGCTGTGCTGCGATCCATGGAGACCACACTGgtgagcttggacagcacactAGGCCAGACTCCAGGCCGATTCCTCAGCTTTGACTCCTTGGCAGCAACAGAAGGATCAGATGTTTCCGGATGAAGCAGGGGTCTGGTTTTGCAATAATTGGCAGGGCTGCTCCACGTTCTCCCGCAGCCTCCAGCTCCCATCTGGCTGAAGATTTCAATCTGTCGGTTGGGGAAGCAGTTCTGTAACTTCAGTTAATTTCATCTGGTCATCAGTgcagctaattaaaaaaatca

Function

GO: NA

KEGG:

id description
K12615 EDC3; enhancer of mRNA-decapping protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34035 lncRNA upstream 110652 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 149763 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 233706 36305974 ~ 36306877 (+) True G27139
TU33975 lncRNA upstream 237742 36301497 ~ 36302841 (+) True AMCG00007889
TU33945 lncRNA upstream 357861 36102296 ~ 36182722 (+) True G27111
TU34069 lncRNA downstream 115887 36685310 ~ 36727117 (+) True G27216
TU34107 lncRNA downstream 198230 36767653 ~ 36767939 (+) True G27253
TU34125 lncRNA downstream 274558 36843981 ~ 36845524 (+) True G27263
TU34164 lncRNA downstream 386759 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 523226 37092649 ~ 37093330 (+) True G27334
AMCG00007895 mRNA upstream 6455 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007896 mRNA upstream 51137 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007892 mRNA upstream 114802 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007889 mRNA upstream 237772 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007888 mRNA upstream 246394 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007897 mRNA downstream 53630 36623053 ~ 36644439 (+) True AMCG00007897
AMCG00007898 mRNA downstream 75486 36644909 ~ 36646509 (+) True AMCG00007898
AMCG00007899 mRNA downstream 131382 36700805 ~ 36711387 (+) True AMCG00007899
AMCG00007902 mRNA downstream 148331 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007900 mRNA downstream 174561 36743984 ~ 36755828 (+) True AMCG00007900
TU33841 other upstream 919782 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6765548 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7536810 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8085876 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8445842 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1575561 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1599147 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1786506 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1862622 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2123316 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile