RNA id: AMCG00007899


Basic Information

Item Value
RNA id AMCG00007899
length 477
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00007899
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36700805 ~ 36711387 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTCATGGTGAAGTCCATGGTCGGCGGACAGCTGAAGAACCTGACCGGGGGTCTGGGTGGCGGGGAGGAGAAACCCGAGGGCGAGAAGTCCGAGGCGGCCGCGGCAGGGATGACCAGGGAGGAGTTTGAAGAGTACCAAAGGCAGCTGGTGGAGGAAAAAATGGAGCGAGATGCTAGTTTTGCACAGAAGAAGGCGGAGAGAGCTACAGTGAGGACTCACTTCCGAGAGAAATACAGACTTCCAAAGAACGAACTTGACGACACTCAGATCCAGTTGGCAGGAGATGACGTTGAGCTGCCCAAGGAGCTGGCCAAAATGATCGAGGAAGacaatgaggaggaggaggagaaggactCAGTCATCGGCCACCTGGCCAACATTCAGAACATGGACCTGGACCAGCTGAAAGGCAAAGCTCAGGCCACACTGGAAGAACTGAAACAGACAGCGGAGAAGTGCAGTATCATGTGA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15295 CPLX3_4; complexin-3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34035 lncRNA upstream 270874 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 309985 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 393928 36305974 ~ 36306877 (+) True G27139
TU33975 lncRNA upstream 397964 36301497 ~ 36302841 (+) True AMCG00007889
TU33945 lncRNA upstream 518083 36102296 ~ 36182722 (+) True G27111
TU34107 lncRNA downstream 56266 36767653 ~ 36767939 (+) True G27253
TU34125 lncRNA downstream 132594 36843981 ~ 36845524 (+) True G27263
TU34164 lncRNA downstream 244795 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 381262 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 492483 37203870 ~ 37205956 (+) False AMCG00007923
AMCG00007898 mRNA upstream 54296 36644909 ~ 36646509 (+) True AMCG00007898
AMCG00007897 mRNA upstream 56366 36623053 ~ 36644439 (+) True AMCG00007897
AMCG00007894 mRNA upstream 131382 36540583 ~ 36569423 (+) True AMCG00007894
AMCG00007895 mRNA upstream 166677 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007896 mRNA upstream 211359 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007902 mRNA downstream 6367 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007900 mRNA downstream 32597 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007905 mRNA downstream 60225 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007903 mRNA downstream 104263 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007906 mRNA downstream 136167 36847554 ~ 36855323 (+) True AMCG00007906
TU33841 other upstream 1080004 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6925770 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7697032 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8246098 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8606064 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1433597 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1457183 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1644542 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1720658 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1981352 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile