RNA id: AMCG00007903


Basic Information

Item Value
RNA id AMCG00007903
length 5787
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00007903
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36815650 ~ 36841835 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATGAGTGATAAGAGGAGTATTGTGGAGGAGAACAGCTGGCTCTCCGGGGTGTTTTTAGGAAGATTCCCACACACTGCTGTAGTCGAAGAATCAATAGGTGCAGTTGAACTGGCGTACATTAATTCCACTCTGTGCGTTCTGgtgttgtttgcttttcagACATGGCTGAAAAACTATGGCTACCTTCTCCCCCATGACATCCGCACATCTGACCTGCGCTCAGAGAAGGCCATGCAGTCGGCTGTCGCTGCCATGCAGCGGTTCTATGGCATTCCAGTGACAGGAGTGCTGGACCAGACCACCATCGAGTGGATGAGGAAGCCACGCTGTGGGGTCCCAGACCACCCCCGCACCAGCCGTAGGAGGAGGAATAAACGCTACGCTCTGACGGGTCAGAAGTGGAGGCAGAAACATATCACATACAGCATACACAATTTCACGCCCAAAGTTGGGGAGAAGGACACACAGAAGGCTATCCGGCAGGCCTTTAACGTGTGGGAGACAGTAACACCCCTGACATTCGAAGAGATCCCATACTCTGAGATCAAGAACGAGAGGAAGGAGGCCGACATCATGATCTTCTTCGCTTCGGGTTTCCACGGAGACAGCTCCCCCTTCGACGGCGAGGGGGGGTTCCTGGCTCATGCTTATTTCCCCGGCCCGGGTATCGGGGGTGACACCCACTTCGACTCTGATGAGCCGTGGACGCTGGGCAACGCCAATCACGATGGCAATGACCTGTTCCTGGTGGCGGTACATGAGCTGGGCCACGCCCTGGGCCTGGAGCACTCCAACGACCCCAGCGCCATCATGGCCCCATTCTACCAGTACATGGAGACACAAAACTTCAAACTGCCCCTGGACGACCTGCAAGGGATTCAGAAGATATATGGGGTTCCCACGGCGATGCTGGAGCCGACACGGCCCCTGCCCACACTGCCCGCTCGCCGCACTCACTCCACCTCCGAGAGGAAACACGACCGGCAGTCCCGGCCCCCGCGGCCCCCCTCCGGAGACAAGCCAGCCTCCCCTGGGACGGCCAAACCTAACATCTGTGATGGCAACTTCAACACCGTGGCCTTCTTCAGGAGggagatgtttgttttcaagGATCGCTGGTTTTGGCGACTGCGCAACAACAAGGTGCAGGAAGGCTATCCCATGCAAATTGAGCACTTCTGGAAAGGCCTGCCCCCCAGGATTGACGCTGCGTATGAGAGGTCCGATGGGAAGTTTGTCTTCTTCAAAGGTGACAAGTACTGGGTGTTCAAGGAGGTGACAGCAGAGCCAGGCTACCCACACAGCCTGGTGGATCTGGGCAGCTGTCTGCCCCGCGAAGGCATCGACACTGCTCTCCGCTGGGAGCCTGTGGGCAAGACCTACTTCTTCAAGGGGGATCAGTACTGGAGGTACAATGAGGAGAAGAGGGCAGCCGACCCAGGATACCCCAAACCCATCACTGTCTGGAAGGGTATCCCCGAATCCCCCCAGGGAGCTTTTGTCAGCAAAGAAGGCTTCTATACCTATTTCTACAAAGGGAAGGAGTACTGGAAGTTTGACAACCAGAAGCTGAATGTGGAGCCGGGCTACCCCAAGTCGATTCTCAAGGACTGGATGGGTTGCGACCAATCGGTGATGGAGAAGAACAAAGACCGGCACCTCCCCCACGACGATGTGGACATCATGGTGACCATCAACGACGTGCCGAGCACCGTCAACGCCATCGCCGTGGTGATCCCCTGCATTCTGTCTCTCTGCATCCTGGTGCTGGTCTACACCATCTTCCAGTTCAAGAACAAGGGCGTGCAGCAGAACGTCACTTACTACAAGCGCCCAGTGCAGGAGTGGGTATGACAGGCTGCGGCTGCGCTGCCACTTAGAAACATTGTCAAGAGGGCTACAAGCAACTGGAGCGCCATCTGATGAGTGGCTGCCTTGCACAAAACTGCGGGGGTTTATTAAAGCCCCAGGACCTTGAGATATTGGAGAAATGGCCACATTAATGTTATTTAGCATGAGCAGAAGCACAAAAGCAGGGAGGCCTTTGAATTGTAGAAGCTGAGcagcctcctccctctcctgccTTGTGAGCTACGTCCACTCTCTCTGGCTGTGCCATTCTGTACGTTATCCTCTTCCCAAGACTGCCACCTGAACTTGTGAGGGCAGGGGAGCCCCATGTGAGCGTTCATAGCCAGATACCAGCAGTCTTCTATGAACCCGTCATCTGTTTCTCTAATCTCAACTTGGAGttgacataaaacaacaaaacaaataaacaactaaataaacaattgtaggTAGAAAGGCCATAGAAAAGGAAACCAAGGAATTTTCCATGGAACattgaatcttttaatttaaagagacTTCATGAACCATcaaagaaatgcagttttttcGATGAACTCCTTTGACTCCCAGATAGCCTCAGATTCCCGACGCTTTCTCACTTCAGTAATCAGAGCTCTTGGATGGGGAAAGCATACTGCAGCTGAATGATTTTAATTGGAGCCAGCAACCTTATCAAAAAAAAGTCTGGAGAgaacaaaaaatgattttgtataAAAAGAGAGAAGATGTGGGTGGTATTCATATGGATATCTCCTGCTAGTGTCCAATGGCTGTTAagaacatgtttattttcatgatttcagATCACAGACAAATACACAGCACTCTTCTCTGTACTCCTCAGTGACAGTGTATACCTATCTGGCATGTTGTCAACAGGAATGACTGGGGGCCAAATGAACTGCTATCTTGAAGCagccttaattttttttttatatatctgttgtctataaatgttttcattgctgTCTTTGTATCACAGTTCTATACCACAACAGGAATCTTACAAAGTGGGTTTGATGAGAGCATGGGACACTGGGGTTCTCCAGCACAGTGGCCTGCAAACAGGGGCCGTGTGTGACTGCTGAAGCCTGCGGTCAGAGGGGCGTGAGGCTGGCTGGACTCCCCCTGTCAAGACCCCATAGATAAAGAAAACAGCTGGTACAAGCCACGAGGCGGTTGGCTTTTACACCCCCAGTTCAAGTTTAAAGAAGAGTAGACTCCGTTTTTCATTGAAGAATATCATCTTAAATCCAGGACTTAGTCGAGGGGACAGAAATATAATGAACCACTCATAGTAGTAATGTAATGGTTGCTTTTATACAGAATTTTCCTTGCTTCATATCACCAATTCCGTACCATACTGGGAACTTTTTGTACTcataaaatgtttccacttcatcactaatttattttgtagaaatatTTTCCGTAATGATATTAGTCAAGAATTGGATAATTTGACAAGTGTAGAACTGAGATTGATGTCACAGCTCTTATCAGACCTGAGTCTGACTCCAGCTTGGGCCGGCCAGCTGGATTTTAAACTGTGGAGTGTTTCTGCTTGTGTTCCAACCCAGACAGATATAACATTGTGCTATTATATTGACCTTACACTCAGTGCTAAGGTGTGCGTTAAACAATTATCATATGCATAATTTTAGATGTGCTTAATCTGTGTGGTTTGCCTTGGCATACTATCGGTATCAACTTCTAATACCACCATGTTAGTTTGCTATGCTCATAAGAAGTCTTATTTTGACTAAACTATATTTAGTTGAAAAACGTACACATGGATAATTCATGCGGTGTTGAGATTAATCTTGTTCTTTTGCCAGTGTTTCACCCACAATTCTTAAAGGAGGTTGACTGTGTTGTATTGTGGCTGAGCTTTAAAGATTAGTGACGCAATGGGGTAGATGCCAGTGAAGGTTTCGATTGCCTATTACTGGCCTAGTTCTTAACTGCTCAGATGCAGTCCGTAGGGTCCGGGTCAGATAACATATATGTTACAGCCATGTATTAGGAGCTGACTGGCTTGGCTCTTTCAAACAATGGATGGATGATTTTCTGTGATTGATTATCAACCAGAAACCATTCAAGCAGAATACTTGATCTTGTCTCATTTTCAACCTATCCTACTTTCTCGTGCACACTTGATTTATACAGTAGGGTCAGGTCTATTCTTCCTTTTTAACCAGTATAGCAATTTTTACAGCACTTCATAGTCATATACACTGGAGTTTACTGCAAAACAATCCACTGGCTAATGCAGTAACAGCCTTCATCACATAAAAGGGTTATTTTTAACAGGTCTTTTCCTGCTTACTAGGTTCTCTCACATAATGCAATGGCAATGTCATTTTGAAGATATAACTGTGTACATCACCATGATGCAAGGCTCGGGAATCAGATCACTGCGTCACTGTGGTGCTGGGTAGAAATTAAGATCCATTAAAGCAGACAATGTAATTAGTGCTGCCCAGAGCACCCTGTCTGCAACTGTATCTCACAAAGGATGGAAAGAAATAGCGGCTGATATTGGTCTGAAATGCCTCCATGCAGAGCTGTTGCTTTTTGCGCTGCCCCTTGCAGGTTCCAAGAGCTTCAACTGTTTGATTTCTATCAAGGAAGGAATACTCATGGTAGTTCACTAGATAACAAAGCAAAGGGAAATTAGGTATGTTGAAAAAACTGATTGTTTGCCTTATTGTTTTTCTGGGACACAGTTTACATCCTGTTTCTtgcatttcttacattttaatggaTGAATGAATAATATGTTTTGGATCTGGAGATGTCAGTCAAAATCAGTGAGCATTTTACAGTTCCAGTTCTGGATTATATGTTCAAAATTCTGAATTAGGAAAGAGGTAAAAAGTTTTTTCTTTGAACATTTTTCCCACATTCCCATTtacaatatttgcatttgtgaTATTTGGACATTCTGGaattttaataatgatattccatgtgcattttttgttattaatgtgtCACATCCTGGATCTGCATCACTGAATCATAAGCATGGTGCTGTGAAGTTCTGCTCTCATAGTCATACTATATCTGCTGTGGAGAGGCATGAATGGGTCATGTTTTCAGCTACCAACAATATGCTTTATAAGTAAGAGTCTGTGGGAAGGTTTTGTAAACCTAATTACAATGAGTACATGatgtataaaaaacatacaggaGATATAAAAGCTGTTGCACTAATTTTTACAACTGTGAGCCTTCCCATCAATTGTTATATATGCTTTTTATGCTCTAGGCATCTAGAAAGTCAATTCATGCAAATACCCTAAAGGattttctttgtacattttggtaattgagttgttttttaatttgattgtttcttgttgttttatttacttttttcattgtttttatagcATTTCGACAGCAATCAGTAGAGATCTAACTGTGAACTGGAATAACAGTTCTGTGGTACTGTACTCTGAGCTGCTCCACACTTCAGTGCCAAATCACTGGTACACTGTCTTATATTTGCTTGTGTTTGCTGTAAATCCACTGTGTTTTACCAAAAGTAAAGGTTCATCAGgcaaatgtgaaaatacagctgttcacaatgtatGAAATAGGGCCCAGCCTTGGCCTTAATGGCTCTGCAATCCCCTCGATTGAGGCTGGATGAACACTGGAGTTTCAGTGTGGCGAGAGGCGTGACTGTGTGGAATCACCTCATCTCTTTCGCCATTGTAGTGCGGTGGACCTGAAGTGAGGAACAACACACCACTGCCTGTGGGAAGAGCTCTGCTGTTCTCTGTCAGCAACTGCTGCACCTCCAGCTTTATAATGCTGTATGGGCCCTCATCATACAATTCCTTGCAGAATACTATTGTTCAGATGAtctatacatgtttataaaGGACAACCTGTATATAGTACATGACCTCTAGT

Function

GO: NA

KEGG:

id description
K08002 MMP24; matrix metalloproteinase-24 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34107 lncRNA upstream 47711 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 88533 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 385719 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 424830 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 508773 36305974 ~ 36306877 (+) True G27139
TU34125 lncRNA downstream 2146 36843981 ~ 36845524 (+) True G27263
TU34164 lncRNA downstream 114347 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 250814 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 362035 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 653324 37495159 ~ 37499385 (+) True G27400
AMCG00007905 mRNA upstream 23912 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007900 mRNA upstream 59822 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007902 mRNA upstream 97135 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007899 mRNA upstream 104263 36700805 ~ 36711387 (+) True AMCG00007899
AMCG00007898 mRNA upstream 169141 36644909 ~ 36646509 (+) True AMCG00007898
AMCG00007906 mRNA downstream 5719 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007904 mRNA downstream 13793 36855628 ~ 36865482 (+) True AMCG00007904
AMCG00007912 mRNA downstream 87218 36929053 ~ 36939598 (+) True AMCG00007912
AMCG00007909 mRNA downstream 114824 36956659 ~ 36969735 (+) True AMCG00007909
AMCG00007914 mRNA downstream 181577 37023412 ~ 37034789 (+) True AMCG00007914
TU33841 other upstream 1194849 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7040615 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7811877 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8360943 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8720909 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1303149 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1326735 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1514094 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1590210 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1850904 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile