RNA id: AMCG00007904


Basic Information

Item Value
RNA id AMCG00007904
length 2623
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00007904
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36855628 ~ 36865482 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAGctcagaaacgtgtcctgtgatAGATACAGACCCAGACACACAGATGCAATGTAACAGTTAACCGCCCCTGTGCGAGGGGTGACGTCAGCGCCGCGGCTCGCAGGGAGGCGGCTGTGCGGACTGACCAGCAGCCAGACTGGGAACCAGCGACGCAGCAGCGCAACATGGGCAACGCGCAGCCGACCATCGTGGAGTATCCTGACTTTGATGTCGTTGCTGACATTAAGGCGATCCGCAAAGCCTGCAAAGGGCTGGGCACCGATGAGGAGGCCATTATCGAGATCTTGGCAAACCGCTCTTGTTTCCAGCGGCTGCAGATTAAGCAGGCGTACTTTGACAAGTACGACGATGAGCTGGTGGAGGTGCTGAAGAAGGAGCTGTCGGGCAGCTTTGAGAAAGCGGTCATTGCCATGCTGGACTCGCCCGTCGTCTTCGCTGCCAAGGAGCTGAGGAGGGCCATGAAGGGCGCTGGCACGGACGAGGACGTGCTGGTGGAGATTCTCTGCACCCGAACCAATGAGGAGCTAAGAGCTGTGAAGGAGGCCTACCAAGAGTTGTTCGAGCGCGACCTAGAGGAGGACATTGAGGGTGACACCAGTGGCGACGTGAGGAACCTGCTCATCACCCTCTTGCAGGCTGACCGGGATGAAGGCTATGAAGTGAACGAGGAGCAGGCTGTAGAAGATGCCACTGAGCTGTTTGAGGCAGGAGAGGGCCGCTTTGGCACAGATGAGTCAACCTTCAGCTTCATTCTGGCCAAGAGGAACTACCTGCAGCTGCAGGCCACCTTCAAGGTGTACGAGCAGCTCTCGGGGACGGACATCAAGGATGCCATTAAGAATGAAGCTTCAGGAACCCTAAGAGACTGCTACATGACTCTGGTCAGGTGTGCCAAGAACCTGCAGCTGTACTACGCACGCCGCCTGAACAGTGCCATGAAGGGGGCGGGCACCGACGAAGACACGCTGATCCGCATCATCGTGGGCCGCTCCGAGATCGACCTGGAGACCATTAAGGACATGTACTCGGAGAAGTACGACGTGCCGCTGAGGGACGCTCTGTGCTCGGAGTGCGGCGGCGACTTCAAGAGGCTCCTGCTGCAGATCCTGCACTGAACCACAGCGCCTCCCCCTGATCAAGCCTCTAAAGTGCAGGGGGATTTTTAACAATCAAAGCCAGTGTAACTGTTAGCCAGCATGCATACGTCTTATGTAACCCTGTTTTATATGCAATTCCATCTCGCATGACACCCATCTCTAACCCATCATTAACACAGAAGTCCTGACTGTGTGCAGACATTTGAATCCGATGCAAAAATCCTTTGGGTTCTGAAAAACTAGCTCTTTTCAGTGCGTTCAAATCTAACAAAGGAAGCAGGAAGGGAAACTCGTTAAGCAGCAAGAGCAATATCCCAGAGAATCATCCTGCATTTGCCATCTGCATTCCTGTTAGTGTTACTTATTTTTACTATGGGGACCAGAACCACAACATCCtgagatttttcattttctaaacgTGTACTTCATGCTGAAATCATTAATGTCGTCATACCCTGATCCTCGACTGCTGCTTTCTCCGACAAATCACCACATTGCAACGGGGAAGAGGGAAAGCTCATAATCACTACATtgcaaacaaaatctaaaatgaataaaaaaactattctgAAAAGCTTTAATTACGAACATCTCTCCAGCTTTTATACAGCATCTATCTGAAGCACTCATTGGCATTTTATACAACCCTGTCGGCAGAAAGCAGATGAGCTTCAGAAGACGACATGAATCCGTCATAACTTTTGTAACCGGTGCAGTTCTGTTTCCGCACAGAGCCTCCAGTTGTCTGGGTCAGGAATATGATGGACAGGGAGCACAACACTTCAGTAAAGATCAAATCAATAAGGGACCAGCTGTCAATTGTAGTGTGTTCAGACATCATCTTTCtactaaacaaaacactgaacaaaCCGTGATTGTGTGGCTCATTCTTTTCACTGAAAAAATTGTCTGCTTTATGGTCGTtgactgctgttgtttttgttgttttcagttcagcAGCGTCCTCAGTTCTGCTTAgacagtgtatttttattggTTATAGCTCAAATCCAGAGCAAGGAAATATTTGGATGTATGTTAAATCTCATATGTAATACCTGTTTTCCAGACTGCTCGCTCAGCTGCTCTCAGTAGGGGGCGGTCAGTCTCGGTCACATTGTCTCCTTCGGCCTCAGTGAGCATCTAGGACTGACTGTGCAGTGACAGGACAGTCTGATACTCAACCTCTACCTGTAGTGTACTGCTCTCTACAAGGCCAGGCCACTGACAgagaaacaatgcattaataatatagatgtgtattcatttataaagATTTAATATATGCAGCTCTGTACAACTGACATCTCTTTCACACACTTCCTGTAAAATACCAGAGCCCCACCTGTCCTCCCAGTGCCTCCACAGTGGGATTATCTAGGGGGAAGGCTTCACACTAACCCTactaataatgtattcatttcacCTGCACACGAGCTGTAGTGTGAGAATAAAGTTTTGAGTCCATATGACTGACGCCTACacattgtgttttaagtgtGTGCTCCTTCtggattttaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K17099 ANXA13; annexin A13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34125 lncRNA upstream 10104 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 87689 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 128511 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 425697 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 464808 36329420 ~ 36390820 (+) True G27154
TU34164 lncRNA downstream 90700 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 227167 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 338388 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 629677 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 911583 37777065 ~ 37777462 (+) True G27462
AMCG00007906 mRNA upstream 305 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007903 mRNA upstream 13793 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007905 mRNA upstream 63890 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007900 mRNA upstream 99800 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007902 mRNA upstream 137113 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007912 mRNA downstream 63571 36929053 ~ 36939598 (+) True AMCG00007912
AMCG00007909 mRNA downstream 91177 36956659 ~ 36969735 (+) True AMCG00007909
AMCG00007914 mRNA downstream 157930 37023412 ~ 37034789 (+) True AMCG00007914
AMCG00007917 mRNA downstream 175000 37040482 ~ 37052197 (+) True AMCG00007917
AMCG00007913 mRNA downstream 191354 37056836 ~ 37071433 (+) True AMCG00007913
TU33841 other upstream 1234827 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7080593 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7851855 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8400921 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8760887 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1279502 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1303088 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1490447 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1566563 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1827257 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile