RNA id: AMCG00007905


Basic Information

Item Value
RNA id AMCG00007905
length 5980
RNA type mRNA
GC content 0.49
exon number 35
gene id AMCG00007905
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36771612 ~ 36791738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTTATACGCACTGTTCTTGTGTTCCTAGGCAATATGGCGGCTTGGGATCATTCTAGAGCTTCTATATCTATGATCTTTTCATTCTAGAGCTCTGGTTTCCTCCGAATACACGTCACACCGGAAGGAGCGTTTGGATTGCTGGCGGGAGCTTGTGGGttgtgtgtacatttgtgtCATCATAATCGGCCCAGTTATTACTGCACAATTACCCGGCTAAGCAAAGGTAGGCTATGTGATATTAGAATGTAAACACCACGTCGATATTGTGATGAGTGTAATATATTCGTTTGTTATCTCTGTAACTAAAGCGATAAGTGGGATAAACATTGAGTTACACATCACACTGATCCGGTTACTGTACCAGTGGGCTCAAATCTACATCACTTTACAAAGAACacactttgcaaaaaaaaaaacacacgtgTTCTGTGCTTTATGCAATGTTCGCACACTTCACAGTCACTAGAGTGCTTGTAAtatcttgattttgtttttgctcgGGCATCCAGAGGAGGGTGGACAATGGAGGAGAAGATCGTGTCTCTATCCGGGGGGGAGAGTGTGCGAGAGCTGCAGCAGTGTCTGCGGGCTGTTAAAGACAGCGAGCTCGGCGCACTGATCACTCGTAGCGCAGTGAAGGGAAAGAACATAGGACCTCTCATCAGAGCCATCTTTAAAGGCTCTCCCACCACGGAGGCTGAGGGAGTGAGCCGGAGACTGCTCCTGTACAAGCACTGCATCCGGCTGTGTGAGTCCGGGGATCTGCAGCTGGAGGTGGTGTCGGACATCACTGGACTGCTCATGCTGGAGACACACCAGTTGCCGGGGCCCTCTCTGGCTGAGCTGGCCTCTCTCTACGTAGATGCCATCAAAGGTGGCAGTATCAGCAATGGCAAGTCTTTGGAGCTCTTCCCCAATATCCTCACTGCACTGGCTGCCACTGAGAGTCTGGCCTATGGCAAAGGCGAACTGAGCGGTGAAGAGTACAAGAAGCAGCTAATCAACAGTCTTTGCTCCAGCAGAGATGTGCCTGTGTCCGTGGAGGAGCTGCAGTTTGTAGTAGAGAAGGTTCTAAGGATGTTCCCCAAGCTGGACCTTCAGGAAATCCCTCCACTGGTCTACCAGCTCCTGCTGCTATCTGCCAAGGGCTGTAAGAAGCTTGTCCTGGAGGGCATCACTTCTTACTTTAATGAACAGGACCAGCAACAGAGAGAGGAGCAGAAGGACACAGAGAGCATGGACGTGGAAGTGGTGTCCGTCCCTCAGGACCAGCTGCGGCACGTGGAGGGCACGGTCATCCTACACATCGTCTTTGCTATCAGGCTGGACCATGAGCTGGGCAGGGAGCTCCTGAAGTACCTCAAGGCAGGGCAACAGGGGGAGGTGGGGCGAGTGCTCTGTCCATTCAGTATAGCCCTGCTGCTGTCGGTGGCCCGAATCCAGCGCTATGAAGAGCAGGCGTTCGACTTCCTCAAGGTGGCGATAGTGAAGAGCTTCCGGGACGTACAGGTTCAGCAGGGCTCCCGCTTCGTACAGGACCTGCTGACTCGGCGGCCGTGCGTCTCCCAGATGATCCTAGAAACCGTCAAGAACAGtgtgttcGGCTGGGACCACGTAACGCAAGGGCTGGTGCAGCTGGGCTTCATCCTGATGGACTCCTTCGGCCTGAAGCCTGGGCCTTTTGGGAAGGCAGCTGAGGCTCCCCCTGCCAACCCAAAGACGCCCTCTCAACACGCCTGCCAGCTAGGGGGCCGTATTCTTCTAGAGAGCTTCAAGATGCACGAGCCTATCAGAACCGAGATTCTGGAGCAAGTCTTGAACAGGGTGGTCACGAAGGTCGCCTCGCCGGTCTCCCACTTCATAGACTTGTTTTCCGATATCATTGCGTCAGCACCGATGATTCTCCTCGAGTCCTCCTCCAAAGTGATGGAAACCTTTGACCACCTGGCCTACCTGCCTCTCAACACTGTGCATGGGCTTCTGAGGGCAGTGCagCCCTTACTGAAGGTCAGCATGTCCATGAAAGACTCTTTAATTATAGTTCTGAGGAAAGCAATGTTTTCCAGtcaGCTTGATGCTCGCAAGTCTGCTGTGGCTGGTTTCCTCCTGCTGCTGAAGAATTTCAAGGTTCTGGGCAGCCTGGCCTCCAGCCAAGCTAGTCAGATTATATCTTCCAGCCAGATCCAGGTGGACGTTCACTCGCGCTACAACTCCGCTGCCAACGAGGCTTTCTGCCTGGAAATCCTGGGCAGCCTGCGGCGCTGTCTGAGCCAGCAGGCGGATGTGCGGCTCATGTTGTACGAGCTGAGGCGTTACTATGAGCCGGAGCAGGACCTGCTCCCCCCACTGAAGCTGGAGAGCTGTATCAGCGCACAGGGAGACCAGATCTTCTTACAGGAGCCTCTGGCCCACTTGCTGAGCTGCACAGTCCACTGCCTTTTGTGGTACCAGGACCTTCATGACCACAGGCGCACAACTGttgaggaggatgaggatgaggaggaggaggaggacgaagGGGGGTTCCAGAAGGATCTGGAGGTTCTTCTGCGGTCTGTCACTTGCCGCATGATCAAGAGTGACCTAGAGGACTTTGAGCTGGACAAATCAGCAGATTTTTCCCTTTCATCCAGTGTGGGAATCAAGAACACTATCTACGCTGTTCTGGTAATGGGAGTGTGCGAGGTTCTCATGGAGTATAACTTCCTCTCAGCCAACTACAGTAAGAACCGCTTTGAGGAGCTTCTTGACCTGTTTAATCGCTACCACAAGCTGTCTGAGATCCTGAAGGAGAAGTCTGGGAAGGGCAAAGACAGTACTCAGAGCCGAGAGGAGAGCCTGGCTGTGCTGCGCTCCAGTACCGAGTTCCTGCGCTACTCTGTCAGCACCGCCCTGCAAAAGATCCAGCAGCTGGAGGAGATGGGCCAGACAGACGGGCCTGAGGGTCAGAACACAGACAAGACCTTCCGCTACCTCTGTGACATCACAAGGGTCCTGCTTTGGAGGTACATGTCAATTCCGTCCACTGTGGAGGACTCTGGGAAGAAGGAGAAAGGGAAGACCATCTCCATGCTGTGTCTGGAAGGGCTGCTGAGGATCTTCAGCACAGTCCAGCTCCGCTATCCCAGCAAGGCCTCCCAGTTCCTGTGTGCAGTTGATGTCTCTGAGGAAGAAGACAGTGAGACCGACAACGCCAATGTGACTGAGAAAACGGCCTTCTACATTCGCCAGTTTCAGAGGTCCCTGCTGAACCAGCTGAGTGGAGGAGATGAGGATTTCCACAGTAAAGAAGCCCAGCTGCTGCTAAACATCCTGTCTGTGCTGTCACGGCAACTGGAGCCTACCTCCCCACAGTTTGTTCAGATGATTTCATGGACTGTTAAAATCTGCAAGGAGAGCAGTTTAGAGGATGTACAGTTCTGTAAGGGGTTGCTGTCCCTGCTGTTCAGTCTCCATGTCCTCTACAAGAGCCCAGTGAGTGTCCTGAGGGAACTCTGCCAGGACATCCACAGTCAGCTGGGAGATATTGACCAGGACGTTGAAGTGGAAAAGCAGTCTCATTTTGCCATCATCAACACCAAGACGGCAGCACCTACTGCCACTGTTGGGAGAGTCCTGGAGGAGGTGGAATGGCTGATCTCCAAGAAAAAGGGTCAACTCAGTTCAGAGAGGCCTGCAGCAGGCATGGACTCTCAGCGGGCAGCAGGGCAGCACGACGCTCTGGAGAAGGCCATAATCCTGCAGCTGGGAACCCTGCTGACTGCCCTGCATGAGCTGGTCCAGACCGCCCTGCCGCCCGGGGGCTGTGTGGACACCCTGCTGAAGGAGCTGGCCAGCACCTACACCATTCTCACGTCCCTGTGCAAATACTACATACAGCTCTGTGCCAGCCTGCATGGTCAGCTCTCTCCCAGGTTTGAAAAGCTGgtgAAACTGTCTGGATCCCACCTGACTCCACAGTGCTACTCCTTCCTCACGTATGTGCAGAGTGAGGAGCTGAGTGCCGCTGGGGgggacaagaagaagaagaaagaggaggCCACTACCGCTGCCTCGGCCAAAGCCTTGCGGGAGTCGAAAGCCATTCCCAACCTGATCTTCAGTATCGAGCAGTACGAGAAATTTCTCATTCTTCTCTCCAAGAAATCGAAGGTGAACCTGATGCAGTACATGAAGCTCAGCACGTCACGTGACTTCCGCATCAACGCCGCCAGCCTGGAGGCCGCGCTTCAGGAGCAGCAGGAGAGCCAGAGCCAGCAGACTGAAGTTTCTACCGAAGTTGAGGAGAGCCAGGAACccaagaagaaaaagaggaaaaagtgAGCCAGCCACCCTCTCCATCACTTCCAACCGTGACTATAATTTAGCAGTAAAATTAGTGTTTCTAAGAATAATTTCACCACAATTCTTATTTTCTGAAGatgaataatgtattcttcCATGTGGCGGATAAAAGCAACCAGAGTGCTGACTTACGAACAGTGTTGGTCTTCTGAACTCGGGCTCTGGTCGAATGAAGCTCCAGATTTATGTTGTTAGTGCTGGGGGTTTGACTGCAGGCTTTGCTGAACCAAGGAAGAAATGTTTCGATAATGAAAATGATAGAggatagtttttgttttgtttttttaatctttgctCAGTCCTCAAATATACACTTTAGATATCTGATGATGTGAGCCTTTGTTTTTGTGGCACTCAGTTGCTCACACTTCAGATGAGTCCAGGTAGTGACCCTGACTCCCTGCAGCTGCTTGCCTTTAGCCATGCAGCCTTTAGTGAGCTCAATCAGCAGATAAATATCCAGAGCTTCACCTGACAGAAGAAATAGAAGTAATTGGATTAAAACTGCTTCAAATTATATCAAATCCTTACATTTGCTCAACAGCTTTGGCAGTGTAAACTATTTCCcaggttttaatttttgtttgaatttgttCTCTccatttttactgtttttatcaGATTGGTTCTCCCTGTGTAGTGCTTGTGTATAAGTTGCAAAAAATTGTCATTATCAACAAGTCTATATTTCTCTTCACTAAGGATGTCAGGAATTGATTGAAGTTTTGAAGGTAGATAAACCAGCAGGACATAGACACTGTTAACAGTCGGTGCTTAATGCAATAAGGCTGCACGGGTTCAGTTATGTCAACCATAAGATTGTTAAATGTTTCACAAGTGCTTTTTTCATCTTACTGTTACAGGGTATTCAAACTATTTTTCGAACGCttgctggaaaacaaatattatgttGCAAGACAATTAGCTTTTactttataacaaaacaaagtaaaagctAATTGTCTTTCAACCTAAGTACATTTTTCTgtcatataaatattttctttatttgtacaAATCCTTCTCACATTAAATGTCTGAATCAGTTACACCAGCACtgctattttaattgtatttattgataggGTAGCCTTCTTCAGTTATTATTGAACACAATCctgcaaatcaatatttgtatttggacaACCGATACATGAACATTTGTGCTTCACACCTACTTTTAGTATCGCTTGCCATGCTgtcatatactgtacatgtaaaACTTTGTCTGCAATTCTTACTCTGTCCACATGTTGGAGACAAACACCACAAATGAGATGAATGCTCTTCGTTCaggaattaatcaattaatttgatGTGGACGGGTCTCAGTGAGTCACAGGTCCAGCAaccttaattacatttaattatacttaattGGGGGCttattatcatatatattatgatgtaacaaatacaataatgagtGCTGTACTAAAACCTGCTAGATGAGAGCATATATTTTACCAtgctacacaacactacactttATCATATATTACCATGTTTCAACCATGGTACACTGCAAGTACTGTTTTTATCGCTAATTGCTGTCAAATTGTTAGAGTAAAAGCTGACCTTTATATTGATATGgagagaaattataataaatactgttaCAGTGCACTCTGACA

Function

GO: NA

KEGG:

id description
K10895 FANCI; fanconi anemia group I protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34107 lncRNA upstream 3673 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 44495 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 341681 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 380792 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 464735 36305974 ~ 36306877 (+) True G27139
TU34125 lncRNA downstream 52243 36843981 ~ 36845524 (+) True G27263
TU34164 lncRNA downstream 164444 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 300911 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 412132 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 703421 37495159 ~ 37499385 (+) True G27400
AMCG00007900 mRNA upstream 15784 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007902 mRNA upstream 53097 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007899 mRNA upstream 60225 36700805 ~ 36711387 (+) True AMCG00007899
AMCG00007898 mRNA upstream 125103 36644909 ~ 36646509 (+) True AMCG00007898
AMCG00007897 mRNA upstream 127173 36623053 ~ 36644439 (+) True AMCG00007897
AMCG00007903 mRNA downstream 23912 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007906 mRNA downstream 55816 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007904 mRNA downstream 63890 36855628 ~ 36865482 (+) True AMCG00007904
AMCG00007912 mRNA downstream 137315 36929053 ~ 36939598 (+) True AMCG00007912
AMCG00007909 mRNA downstream 164921 36956659 ~ 36969735 (+) True AMCG00007909
TU33841 other upstream 1150811 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6996577 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7767839 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8316905 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8676871 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1353246 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1376832 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1564191 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1640307 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1901001 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile