RNA id: AMCG00007907


Basic Information

Item Value
RNA id AMCG00007907
length 3161
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00007907
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36842475 ~ 36846583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGAGGAGCGTCACCGCGGCGGCGGATCTGCCTGGAAACACGGCGGCGGTGCGGGCGGAGGGGCTGGCAGGGAGGCGCCGACACGACACCACACTGGCAGTGCAGTCTTGCTGATGGGGGGAGGCCAGAGCTGTGAGAGGAGTGCAGCGCCAGAGGACATCACAGTGACACCACAGGCCTCCGCAGTCCTCACAGAGCCCCCCTCAAACACCGTCGTGGCAGAGACCGCTCGGGGGCCGACAGCAGAGACCCCTCAGGGGCAGAGGACAGAGCTGCCTCAGTGCCGCATGGGTAGTAAGAGAGTGGACGACATGTGCTTTATGATCACCTGCACAAACTGGTACTGAACAAGACAGCCTGTCTCTAAATGAACAGCATGCCGAGGCCACCTTCAAGGGATTCAAATTCAAGCAATGCAGCAACTGACATTATGATCAGTAGTTTTCATTAGACAGGTCTTGCTTCCTTACTAGTCCCTTAAAAATATTCTTCAAGGACAATGTGCAGGTTCCTCCTGCATTACAGGATTCCCTTCCCTGAAAGCAGTTGTTTGACTTTTAAGATGATttaattgttcattgttttcaattagtcaaatgtaatatatcgtatttaaaaacaacaacaaaattgcaatttaattaaaatatataagaaattaaatatgctatttattttctaggttttgacaaagcaaaaatatgtacaaaggACATTGTAGCTTTGATATATGTGCGCTCTTTCATGTTTCAAAATGGCTCAAATACAGAATTATAAATTGACATGTAAATTAACTGTATAACTGTATCTCTTTTGCTACTGCTTTCTCTTCAACTAGCAGGTTTAGTATAACCCTCAGTGCAGCCCCTGCCTTTAGTAGTTAAGGCTTTGCCTGCACACATACCTTGagaatgtttatttctttaagacATTTTTATAGAAACACATTCCCTaataaattcaatatatttgttgGGATTTTTAGTTAATTAAGCAGTGGTACATTTCAGTGAAGGGATGTCATGCTCTCAAATCCACATTCAGATCCCTGATTTCAGAATTTGCATTTACCTTAGCATGTTAGTGtcatgtttgcattttgttctattcaaaacatcatccatacatgATCCAAAAGTAACCTATTTCAACATTAGTGTTGGTTTTTGAATAACACAAGAACATGTGTGCATTAGGTACTACATAACAGATGATAATATCAACACTCTTcatgttccttttttattgacaaatttgtttgaaatacaaCACGGTGAGATATTCTTAGATACAGTGTGgaattattaaagaaaataataaaataaagcaataccTTGCTCCAGTCAATGTGGTTAacaattcaaaaagaaaaataacttgtcTTATAAATGTTGGAACTTTCTTTTATCATGAATGAGGTAAGACttctttatttataacaaaGGCCGTAAGAAGAACAATGCAGTgctgaattaaaaatgcataagcaacagtaataaaaaaggTGGTAATTTCCCAATGATAGTGGTTTATGATGGGTTTatttacatgttgttttttttccagttttgtgaAGGGGACATTAAGTGTCTTTATATTTGTTCCTGGGCTGGGTGGATAGCCTGTCTCAGTCCAGCATGCCTCAGCACCTGCACTGTGCAAACAGAGACGGGCTCTGGACGTCCAGGAACATGGCATACAGGGGCAGTAAGGCGTGAGGGAGCGGGACGAGCCAGCCTCACACTGAGGGTCCCGTTCCCACAGTGGGCTTTCAGCACGGAGCATGGGGGCCGACACCACTGCAACACGGAAGCTGAGGTCTCCTAATCACAAAGGATGAGgatgttttttcaaattttctGCTAGCATATTAGACTGAATCAGAGCATGGGTACTTTGTTGGGTTTCACAATTCTTGAAGAAccattttttgttggtttgttttcaattcttattttgtatttcacatgcAACTCAAGTACGAGAGTATCAAGTATTAACTTCTGTTGCTTCAGTGCAGTGGAGATTAAAGACATGCTTTGGAAGCCAATAGAATtttgacaaatgtattattttgatacagatttaactgaaataaataaataaatacataacaataatatacagGACCAGTTTGGTGTATttagttaaatgtttagttatATTTAGTTGCAAAAATCTCCCATCCCCATCCTTTCATcataagaaaatgttaaaacaaccaaaacagtAAACATTTGCACATTGCAAAACCCTGTATTGTGCATTTATTCCACTATTTTCTGTCAGAAATTGTATGGACcagtcaaataataataataaaatacattaaatcaacattttccaaagagtaatttaaattagttttacaaaaactgtatatttacGTTTTAATGGGAAATCGTAATAGATTAGTCATGGTATCTTTGAGAGTAAAAATTTAAAACTAGATTTTTCTTACTGTAAAAGAAACAGTAATTATCATAAGCAAAAGCAGTTGTTCTTTAACTAACAAcctctttaaaatatttctagTTAAAATCCTTTTCAGTTGTTCTTGAAAtccatttgattaaaaacaagatGAACAATGTATTTACCGTTCATTATTCATAAagctttccatttaaaaaattggCTTGTTCAGTATCTAAAGTATATCATATACTACTGCTTATTAGGTTTTGTACTTTTGatatgttctgttctgttcattttccattaataaaaagtacaatgaaaaccaaaagGCAACAACAGGCTATTTTAAAGGCGACTGTTCTTCTGTCCAGATAGTGCTGAAACGCGCACACAGAAATCTCTCGAGGAAGCTCAAAGATGATTTAACTTTCATCCCCTGGGTCATTTTGTCTGAAGAACACCGTCTGTGACTGAGGAaagaaggggggagggggatatTCATACAGAATTTGCCATGCATCTCATTTATAAACATCCTTTCAGTTCAAATCATTTTGACAAATCTGATGTTGCTAAATAGTTGTGACATTGCCATTCAAATACATCTTGCACTACatagtatttgtattgattaGTCCAACAAATATCGGTTTCTGCTcaccatgtttaaaataaacatggagAGAAATGGCCAgaattgatacattttatttaaatagtaagATTTAGCAgttaaat

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34108 lncRNA downstream 74536 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 81886 36760345 ~ 36760589 (-) True G27252
TU34097 lncRNA downstream 96609 36744068 ~ 36745866 (-) True G27243
TU34047 lncRNA downstream 350629 36491196 ~ 36491846 (-) True G27197
TU34046 lncRNA downstream 374023 36468086 ~ 36468452 (-) True G27196
TU34168 lncRNA upstream 120544 36967127 ~ 36969756 (-) True G27302
TU34205 lncRNA upstream 246066 37092649 ~ 37093300 (-) True G27335
TU34322 lncRNA upstream 720186 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 720620 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 723676 37570259 ~ 37570881 (-) True G27438
AMCG00007901 mRNA downstream 99006 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007893 mRNA downstream 377040 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007890 mRNA downstream 528332 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007891 mRNA downstream 536103 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007887 mRNA downstream 574669 36179909 ~ 36267806 (-) True AMCG00007887
AMCG00007908 mRNA upstream 23548 36870131 ~ 36879680 (-) True AMCG00007908
AMCG00007911 mRNA upstream 38797 36885380 ~ 36900670 (-) True AMCG00007911
AMCG00007910 mRNA upstream 90244 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007915 mRNA upstream 142080 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007916 mRNA upstream 166721 37013304 ~ 37023811 (-) True AMCG00007916
TU33771 other downstream 1972668 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11210883 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11577524 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12574554 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12869810 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 393506 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 648328 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 721034 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 724374 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 726451 37573034 ~ 37588525 (-) True G27442

Expression Profile