RNA id: TU34133


Basic Information

Item Value
RNA id TU34133
length 636
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00007907
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36842475 ~ 36846583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGGCTCTGGACGTCCAGGAACATGGCATACAGGGGCAGTAAGGCGTGAGGGAGCGGGACGAGCCAGCCTCACACTGAGGGTCCCGTTCCCACAGTGGGCTTTCAGCACGGAGCATGGGGGCCGACACCACTGCAACACGGAAGCTGAGGTCTCCTAATCACAAAGGATGAGgatgttttttcaaattttctGCTAGCATATTAGACTGAATCAGAGCATGGGTACTTTGTTGGGTTTCACAATTCTTGAAGAAccattttttgttggtttgttttcaattcttattttgtatttcacatgcAACTCAAGTACGAGAGTATCAAGTATTAACTTCTGTTGCTTCAGTGCAGTGGAGATTAAAGACATGCTTTGGAAGCCAATAGAATtttgacaaatgtattattttgatacagatttaactgaaataaataaataaatacataacaataatatacagGACCAGTTTGGTGTATttagttaaatgtttagttatATTTAGTTGCAAAAATCTCCCATCCCCATCCTTTCATcataagaaaatgttaaaacaaccaaaacagtAAACATTTGCACATTGCAAAACCCTGTATTGTGCATTTATTCCACTATTTTCTGTCAGAAATTGTATGGACca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34108 lncRNA downstream 75391 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 82741 36760345 ~ 36760589 (-) True G27252
TU34097 lncRNA downstream 97464 36744068 ~ 36745866 (-) True G27243
TU34047 lncRNA downstream 351484 36491196 ~ 36491846 (-) True G27197
TU34046 lncRNA downstream 374878 36468086 ~ 36468452 (-) True G27196
TU34168 lncRNA upstream 123162 36967127 ~ 36969756 (-) True G27302
TU34205 lncRNA upstream 248684 37092649 ~ 37093300 (-) True G27335
TU34322 lncRNA upstream 722804 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 723238 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 726294 37570259 ~ 37570881 (-) True G27438
AMCG00007901 mRNA downstream 99861 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007893 mRNA downstream 377895 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007890 mRNA downstream 529187 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007891 mRNA downstream 536958 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007887 mRNA downstream 575524 36179909 ~ 36267806 (-) True AMCG00007887
AMCG00007908 mRNA upstream 26166 36870131 ~ 36879680 (-) True AMCG00007908
AMCG00007911 mRNA upstream 41415 36885380 ~ 36900670 (-) True AMCG00007911
AMCG00007910 mRNA upstream 92862 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007915 mRNA upstream 144698 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007916 mRNA upstream 169339 37013304 ~ 37023811 (-) True AMCG00007916
TU33771 other downstream 1973523 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11211738 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11578379 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12575409 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12870665 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 396124 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 650946 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 723652 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 726992 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 729069 37573034 ~ 37588525 (-) True G27442

Expression Profile