RNA id: AMCG00007908


Basic Information

Item Value
RNA id AMCG00007908
length 4025
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00007908
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36870131 ~ 36879680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGCGGCACTAACAGCGCACCCGCCCGCTGTGCGCCTCACCGCGGTGCTCTGTGTTCACCGTGTAACAGCAGCGCGCCGGCTCGGACCCAGTCACCACGACATGATCCATTCGGACGCCCTGCGACCGGCCTCGAACCCGGGGCGGAAGCCGCTGGGGAAGCTGGCCGCCCGGGTGGAGGAGGTGAAGAACCCGTGGCGCCAGGGCTCCACTCTGGAGCTGAGCCACAGCGAGGCGGCCCGGCTGGCCACGGACGCGCTGCTGGAGGCCGGGGAGAAGGAGTACCACCGCGTCCTGTCGGAGGAGAGggagctgtccttcctgtccgCCGCGGAGATCGCCTACATCACCCAGAACTGCTCCAAGAGCAGCATGGCCGACGGCTGCGCCAACGGCTCGGACAGGGACTCCTACGTGGAGGGGGACACTGTGTCGGAGCTCACCTCCGGGACGTACTTCCCCATGATGTCCGACGAGGATCCGCCTGTGCTGGAGCTGGGCTGGCCCGAGCCGCAGTCCCGATACGGCCCCTCCGAGACGCAGATCTACTTCCAGAGAGACAAGTCGCACAACGTGAAGGACCTGATCCGCTCCCTCATTAGCAAATCCAGGCGGGTCATTGCGTTGGTAATGGATCTCTTCACCGATGTCGACCTGTTCTGTGACCTGATGGAAGCCTCGAACAAGCGCAAGGTTCCAGTGTACATCCTGCTGGATGAGAAGAACCTGAAGTATTTCCTCGATATGTGCAGCGCCCTGGAAATTCGCAACACACACCTCGGTAACATGCGAATCCGTAGTGTCTGTGGAGACACTTACTGCACCAAGTCTGGAAAGAAGTTTACAGGGCAGGTTCAGGAGAAGTTTCTGATTATAGACTGTCAGGATGTGATCGCTGGCTCTTACAGCTTCACCTGGCTGTCCTCGCAGGTGCACAGCAACATGGTGTTGCACTTCTCTGGCAAGATAGCGGAGAGCTTTGACCACGAGTTCCGGTGTCTCTACGCGGACTCCCAGATCATTGACCGTTTCCACAACCCTGATGAGGAGGGACTTGCCCACTACTCCTTTGGTCCGCCGGCCCCCCACTGGGCTGTGAGCCATAACCAGGAGCGCCAGCACGAGCAGGAGCGTGTGTGCTCGGACAACTCCAGCACCCTTTCCAACAACAGCATCTCCAGCATCAAGAAGTCGCCAGGTATGCCCACCCCCACCTACAAAGTGAACTATGATACGAAGGAGCCAAACAACAGCTACCCCAGGGGGCAAAGCCAGCTGTCGCATACCCAGAGTAGCTTGGGCAAGAAGGGTTCCCACAATGGCCACATGCCCACTGTGGACTGGTCCCACTTGGGCGCTAATTCCACATCTGGTGCAGAGTGGTCCAAATCTGGAACCCCTGATGTCATGTCCAGGAACATGGCTTTGTCCTCCAAGATGCAGGGTCTGGGCCTGTTTGAGTCTAAGCCCAACTTCACACACATGTCCAAGAGCCCTCCACAGCTGGAATCCGGTTTGGCTGGGAAGCAGAAGAGCTCCGCCACTCCTCTCCTCAGCAAGATCTCCGATTTCTTCTCCCCCTCTGCTAAGGACAGAGATGCTGGGGCATTTCAGAAGTCTCCCCCTCACAGCATGGCCTTCGGGGGGCCGGACCTGTCCCAGACTGAGCCGGAGTGCAGGCCCCCGCAGCCCCCTGCACCCATTGCTGTGGAGTTGCATCCCAAGGACAGGCAGCTGGTCCGCAGCGATGAGAAGAGGATGACGCTGGGACACAGCAAGCTGGACCTGGTTAACCATTACAACAAGATGAAGTCCAAGCAGGTGTACAGCAGGTTTgagctgaaaaacaacaatggcaacaacaactgagCAGCACTGGGCAGAGTCCAGCGAACCCAGCAGCAGCGGAGGGCAGAGGGCTGCACAGCGACGGGCCAAGCAGACAGGAGCTGTCAGCTGTAACCGCACCTTTCTCCTGACCTTCCTTTCTTCTGTTCTCATGGTCGTCAGCTCCTAGGTGTGGCTACAGTGAAGATGCTTACAATGAAGGGACtcttaattttctttctgtaaatgCCCATAGAGGGAATCCAGACAGTTTCTTTTCTATAGATGTTACCATTGTGTTGtaagttattttattgtgcaGAAACACCTGTCAgcataatacatacaaaaattaaatgtatatgcttAACAGACTGAACCAGAAGGAATGTAATAACGTCCCTCAGGTAACATTTTACCTCTTATTTGTACTCGTCTGTTTTATGTAGAACAGGTGGCCAACTGCCTCAGATCAGCTCCCACTTTGTTGCTGTGGATGTGCTCCCAGACCGCACAGAGTCAGAGCACATGCGTGTGTCGAGAGATGCttcatgttttagtttgtttaacaTGCAATCCCATAGATACCACATGATGGACTTCGCAAAGCATTCACTCAATTGTCGGACACATGCTATATTGTATAGGTATTTAAGGGAAagttctgtgtatttattcagttttatctGAACTTAACATTTCTTGGAGAAAAAATGTAAGAGTCTACCAAAGTCTGTACAGGGATGCAGAGCAGTGGAAGGTGGGTTTCTAGTGGGAGTATTCTGTGCTGTAGATGTATATAAATCTAAGgggttggaaaaaaaatacatgaatgtttgtgtgtttacaaaataagtgcactgtaaaatatgtaatgcaacGGAATTATATTGTTTGTGAGGTGTCGGTTTTCAGTGTTGTATGATCTGTGATTTATCTACTGTAGCTTTaggtccccccccccccgatttACTGGGTTACCCTGTCCTTCTCAGTACCTCACCTTGGTTTACAGTGAAGTATTTATTGGTAGCGTGTCTTTCCATAATGCTGTAACCAGGACAGGTCACTGGATGCCGTGGCGCTACATGCATCCTCTACGGTTGGCCTTGAATTCAACTGCCTGTTGTCTGAGCACCACGATTGTCTACTTTTCCCTCTAGGAATTGTAGGCATAGACCTTTATAGGACTGAGTCTGTAAAGTGGAGGGGACACCAGTCTACATGTTgctaacatttttattaaaaagtgcatttcttTGGTTTTAGAAATTGTGATGCTACATTTTCAAGCAGCTTTGTTGTTTGCAACATTATCAGATGAGTTTAGATtttgtagaagaaaaaatacataatagaaTAATTTGATCATGTGACTACCTGCTTCTTGTGACTAAACTTCCTATTTAGGTTCATTATCATGTGTATATGctctaattataataaacaattatataataatgaaaaatattgatatgAAATCTGTAATgcatatattcaatatttaattattaatgtaattggCTACCCATAAACATTCTGGCTACATTCTCTACAAAATGTAGACTGGTGTCTCCTGAAAGTAGAAGCAACAGGTTTCATTCTGCATTatctaataaaatgtacattggtGTCCCTTCAGCTTTAGGGTTGAAACTGAATTCAGAAACCGCTTGGCTGTGTTCCTGGGTGTCCTGACAGTGTTTGATCTGATGTCACTGCTAGATTGTTTTAAGGAATGGAAACCTCTTGATTTAATCCTTCACAACTGGTCTCTCTTAATGTGAATTTTCTACCAAAGGATCAAGCAATGTAAACATAATGATAagagaatttgtattttgttaatgctttcttttgtattagttttttcatttttctaaacattacaaataacaaCCATGACAGAAAATGCATATCGGAAAATTGTGGAAGAAGTATTTGATGACAGTGTTACCAAAAAATAAACGTGTCAACTAAAAGAGAACCTTGTAATCTTTTGTGATTCAAGTACAACCCAATTCATCAGGGTTATGTCGATTGCGCTTCCCCTCCCAGCTGGAGAACTGCATTCCAGAATGTGTGTAAAGTTTTAAAAGAATAACGTGTTCtaaatgtgtacatgttttgatgtgtatttttttctgtgtagcACGTGTATTTGTGGGACCATACAGAGCAGTGCTCTACAATTTGAG

Function

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34133 lncRNA downstream 26166 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 102192 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 109542 36760345 ~ 36760589 (-) True G27252
TU34097 lncRNA downstream 124265 36744068 ~ 36745866 (-) True G27243
TU34047 lncRNA downstream 378285 36491196 ~ 36491846 (-) True G27197
TU34168 lncRNA upstream 87447 36967127 ~ 36969756 (-) True G27302
TU34205 lncRNA upstream 212969 37092649 ~ 37093300 (-) True G27335
TU34322 lncRNA upstream 687089 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 687523 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 690579 37570259 ~ 37570881 (-) True G27438
AMCG00007907 mRNA downstream 23548 36842475 ~ 36846583 (-) True AMCG00007907
AMCG00007901 mRNA downstream 126662 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007893 mRNA downstream 404696 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007890 mRNA downstream 555988 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007891 mRNA downstream 563759 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007911 mRNA upstream 5700 36885380 ~ 36900670 (-) True AMCG00007911
AMCG00007910 mRNA upstream 57147 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007915 mRNA upstream 108983 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007916 mRNA upstream 133624 37013304 ~ 37023811 (-) True AMCG00007916
AMCG00007920 mRNA upstream 258547 37138227 ~ 37141287 (-) True AMCG00007920
TU33771 other downstream 2000324 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11238539 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11605180 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12602210 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12897466 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 360409 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 615231 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 687937 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 691277 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 693354 37573034 ~ 37588525 (-) True G27442

Expression Profile