RNA id: AMCG00007911


Basic Information

Item Value
RNA id AMCG00007911
length 2964
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00007911
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36885380 ~ 36900670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGTGGGACGGGTTCCTTTGACATTGCAGGAGGCGGGGACACAGTGTTACAAAACGTGCATATTTTaatcttacatttaaaatagttactTTAAGCgttggttttccttttctttttccctcttGTACGACTTTTCCGATCCGGTAAGATGTACCGGCGAGCGGCGCAGTGTGCCCTGAGGAGCGGCGCGACTCTTTCAGCCTCCGGGACGGCTATGAAGAGACGGGAGGCGGGAGCCTGTATCTCCAGAGCCCTGGTCATGTGCTCAAGGACAGGGCTGCCCTCCAGCTCGCCATCACAGAGCAGAGCTCTACACTCCACCAGAGAGCTGTTCACAGTAAAAGAAACACCACAGGCGTCCGAGGAAGAAGTGGGAGCCTTCACCAGACTAATAGAAGCCATGGGATTCACAGGACCCCTCAAATATAACAAATGGAAAATTAAGATCGCAGCACTGCGCATGTACACCTGCTGCGTGGAGAGGATCAACTACGACGACTTTTTTGAAAAGTGCTCCCTCCCAGACACACTCAACTCCTGGTTCCTGGTGGCCCAGCTACACGTCTGGATGTGCCTGGTGCGGATGAGGCAGGAGGGCCGTGCGGGGAAGTACATGTGTCGATACATCGTGCACTCCATGTGGGAGGACGTGGAGCAACGCGGGAAAATCATGGGGATTAATTCCTTTGCCTTGAAGGAAAGCATGAGGGCCATGACGGAGAATTTCTATGCTGCTATTTTTGGGTACGATGAGGGGATCCTGTCCGATGATCGAGTGCTGGCCGCCTCGCTGTGGAGGAATCTCTTCAACCAGCAGTGCGAGGACCCGCAGCAGCTGGAGCTCATGGTGGCGTATGTCCGCAAGCAGaTGCAGTACATCGACTCCCTGGATGGAGAGGACCTGCTGCTGACTGGTGAGGTGAAATGGCGCCCCCTGGTGGAAGAGAACGCACAGAGCATCCTGAAGCCTGTCTCTCCGACCTACAATGATGCTGGCTTGTGatccctgccccccccaggCAGTGTGCAGCTCTGTAGACAGTATAGACCACAGAGACCCACTTACCTTCACTCCTACTTAAACCCCTGCCCCCTCCACTCATGACGAGCAGGGAAAGTCATTCTGAGAGAACCCTGAGAAAGTCCGTGGGTTTATTTGTGGacatttgcacatttgtttCTGAAACGAGggattttacttttgaaaagaTGCTGTAATGTACACCTACCATACTTGCACACTCGTAGGGATGCAGTGGACGCCCTCTGgtgcacattttgtttgcacACTTATTTTTCTGTGCTTCTAAGTGTTTTCTGGGACGTGCAACACCGTCTCGAGGTGAATGGATCTTCTTTTTATGGTAacgaataaaatattttgtaaaagtatAAATACTATTTCACTGACAGTAAATTCTGCTTTGTTTCACGTGGAGCTGAAGGTGCTTCCTCAAGCAGTTCCAGGGAAAACGTATCGGTTGAATTGAACGAATGATCCAGCGATGATGTCATGTGGCTCGGTGGCAGGTGAATAGTGTGAAAGCTGGAGTGCGCAGTGTTCCAGCCTGTGCGGAGCCGGGGTCAGCGGGGGTGCGTGGTGTTGGGTTACGGCACAGTGCTTCCAAGAGCAAGACTGCAGCGTTCAGTGTGATCCGCAGCCGTTGATtagaaactaaatatatatatatatatatatatatatgttgtttgaACTATCCTTTTTGCAAATTTTTTACTCTTACCTCACAACTGCATCCCATGCGTGGAGGAAATCAGTTCTGCCCCAGAAGCCCTAACCCTCTGAACAACCCGAACCAACCATCACACTCGCAGAGGCCCAGTAAACACACACCAAAGTGCTTCTCCCACAGGagcttttattaaaaataactaaagaaaAACGTATTGAATAAGAATTACAAGGCCTCTAATTCAGTTACCAAAGTTTCctcaatcattttttaatataaatacaaatattttctcaaaattaaaatatttatgaatacaagccatgttttattttgattgtctgtgtgcatctgAACTGTGTAAAATCCCCCAAACGTTTCTGAAAGTTGTCAATTCAGCAAAGGCACATTTTCCTCTCTGTATCTGCGGTCAGCCCGGCTGCAGGGAGGCGATCTGCGGAGAAACCAATCAGACACTCGAACAGCCCAGTGTCCCTCTGACCTGCCTGAAACACCACAACACTGTTCTAGGATTTAGTTTTCACAGACCATAGAGTATTCATGTATTGTCCCATGGATTGATATTTGACATTGATAAGTTATTGCTGCAGGGGTTTAGTTCTGTTGGGTTGGTTGGTTTACTTGATTTgataagcttttctttttttgcaatgCACAGTACCTTCCTTCCCACCTGTGCTTATAGAATCAGTTACTGTGGAAGTGCCAAGACACTTAAACCGACCAGTACAAATTTATTTATAACTTCTTAAGTCAATAAATGTTATTGATAAGTGAGAACAGTGCATGGTTTCGCTACAGACGTTGCTTGAGTCTGGTGCTTTGTATCCTCCTGCAGGCTGAGGAGGACTGACCTGCAGGTGTATGGAGCACAGACAGAGTTTTAAGAGTTCTAGAgtaattttaaacttaaaattgcttaaaataaactgtttttcaaGTAAGTGAGTGAGCGACTCCAATGTGTTAGCCTAGATCAGGCAGCAGGGGGCTCTGTTTACTTCTATTGTTGGTAgagaattattttgttattgggATAGATGGATAGCTGcctatttgtttaatgttctcACATTATCAGTATTGTATGAAATActgtttcttgttgttctttttataatgatttaattgaagGTTTCCTAGTGGCAAATAAAGTTGTGTTCCCAGTTCGCTGTGTCCTGTGTTGTTGAgggtgtgctgctgtgtgtgcaaTCCTGAGCACTGGGGTGTCACCCTTCTGGACCGCG

Function

GO: NA

KEGG:

id description
K17662 CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34133 lncRNA downstream 41415 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 117441 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 124791 36760345 ~ 36760589 (-) True G27252
TU34097 lncRNA downstream 139514 36744068 ~ 36745866 (-) True G27243
TU34047 lncRNA downstream 393534 36491196 ~ 36491846 (-) True G27197
TU34168 lncRNA upstream 66457 36967127 ~ 36969756 (-) True G27302
TU34205 lncRNA upstream 191979 37092649 ~ 37093300 (-) True G27335
TU34322 lncRNA upstream 666099 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 666533 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 669589 37570259 ~ 37570881 (-) True G27438
AMCG00007908 mRNA downstream 5700 36870131 ~ 36879680 (-) True AMCG00007908
AMCG00007907 mRNA downstream 38797 36842475 ~ 36846583 (-) True AMCG00007907
AMCG00007901 mRNA downstream 141911 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007893 mRNA downstream 419945 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007890 mRNA downstream 571237 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007910 mRNA upstream 36157 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007915 mRNA upstream 87993 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007916 mRNA upstream 112634 37013304 ~ 37023811 (-) True AMCG00007916
AMCG00007920 mRNA upstream 237557 37138227 ~ 37141287 (-) True AMCG00007920
AMCG00007926 mRNA upstream 317100 37217770 ~ 37238928 (-) True AMCG00007926
TU33771 other downstream 2015573 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11253788 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11620429 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12617459 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12912715 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 339419 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 594241 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 666947 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 670287 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 672364 37573034 ~ 37588525 (-) True G27442

Expression Profile