RNA id: AMCG00007912



Basic Information


Item Value
RNA id AMCG00007912
length 861
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00007912
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36929053 ~ 36939598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGCGGCTGGACCAGGGGCCACCTGCTAGTGGGGGGGAGTGCTGTAGACAGCCTGCTCAGATCTTGCTCCAGCAGCAGTCCCACTGCCCCAGTCCTGCCCAGGCCTGTCTGCAGCGCTGTAAGGATGCAGCAGCCCGCTCTCAGCTGCACAGGACCGGCCGTGAAATCAGCACACAGCACGCTTCTCACATGGTCAGCCCCAGGGCTCCAGGAGCGCACAGCTCAGTGCTGCTCGGTGGGAGCTGCAGCTCTGGAATCCGGGAACTCTGCTCCTTGTTCATAAGAGTCAATGTACAGGATGCTAATGGGGCTCAGTCTGGTGGGGACACAGCAGGTGGGCGGGGTGGAGTCAGGGTCCATAGAGTTCATGAGAGTCTGAATGATGGCATGGTTGGTGGGCTCCAGAACAAGTCCCGCTTTTTGGTCCTGCTGAACACCAGGAAGAAAGCCTTCTCCTTGGTCTGTCGGCCCAGGCGGCTGAACCCCAGGCTCCGCAGGTCCACCAGTCGCCCCCTGTCTGAGGCCTCCAGCTCAAAGCACAGCTGGGTCGAGTTCCTGAAATTCTTGAACAGTTTCCAGATGTCGAACACCTCCCATTTGGGCGTGTCCTGGTCATCGATGGAGCGGGAGTGCAGGAGCGTGGCCTTCTGCTTACCTGTGGGGCAGGTCAGCAGTTTCAGGGTGATGGCCCCCCCGGCAGAGCGAGCCTTGCGTGGGTCAGTTGGCCGCTTCCTCAGGATGCGAAGCTCGGTGCCCAGCAGACCCTCCTTCTCCAGTGCGCTGATGTTGAAGTTGTACTTTTGCCTCCTCAGCAGTGGGAGGCGCTCATCTATGAGAGTGAAAAGAGGAATCTACTAg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34125 lncRNA upstream 83529 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 161114 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 201936 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 499122 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 538233 36329420 ~ 36390820 (+) True G27154
TU34164 lncRNA downstream 16584 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 153051 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 264272 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 555561 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 837467 37777065 ~ 37777462 (+) True G27462
AMCG00007904 mRNA upstream 63571 36855628 ~ 36865482 (+) True AMCG00007904
AMCG00007906 mRNA upstream 73730 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007903 mRNA upstream 87218 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007905 mRNA upstream 137315 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007900 mRNA upstream 173225 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007909 mRNA downstream 17061 36956659 ~ 36969735 (+) True AMCG00007909
AMCG00007914 mRNA downstream 83814 37023412 ~ 37034789 (+) True AMCG00007914
AMCG00007917 mRNA downstream 100884 37040482 ~ 37052197 (+) True AMCG00007917
AMCG00007913 mRNA downstream 117238 37056836 ~ 37071433 (+) True AMCG00007913
AMCG00007918 mRNA downstream 145502 37085100 ~ 37086014 (+) True AMCG00007918
TU33841 other upstream 1308252 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7154018 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7925280 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8474346 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8834312 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1205386 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1228972 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1416331 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1492447 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1753141 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile