RNA id: AMCG00007915


Basic Information

Item Value
RNA id AMCG00007915
length 2193
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00007915
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36988663 ~ 36992974 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCATTTGCGGAGCTAAACTGAGCTCCCCCATCACATGACCGGAGCTAGCCCTCCAGATGACGTCTTCAGCGGCGGAGCACATTGCGCTCCACGTCAGAGTAACGTGCGTTGTTGCAGAGTCACTGCGAGCGCAGGCTGGAGTGTAAACAAGAGGAGGACGACTGAGCGAAAAGTCTAGAAGTGTCGCAGCTTTCAGTTTTCTTATTGTCGTCTGTTACACATTATAATCCGGCAGCACGGCCGCTCTCTGCCCAGCATGGTGTGATAGTGCACGGTTGCGGTGCTGTGGCCTTCAGTGTTGAGAGACCATTCGGGAAGAACACACGACAGACTCGGCGCTGAGCTGCGGGCTCGTCTCTGCTTGGCTGTCGCGGCGAGCGCCTGGAAAGTCCCTGGATGTCCAGGCCCGAGTCGAAAGGGACGGCGGGCTGGAGCCTGTGAGGACCGACACAGTGGCTGGTGACAGCGCCAGGCTTTGCACTATGGAGCCTGGAGTGAAGGATCGGGAGGAAGAGACCCTGCAAACGGCCTTCAAGAAGCTCCGAGTGGACGCAGAAGGCTCCACAGCAGCAGTGCGGGTCTGTGACTCTGCAGCACCGAGGCCGGCAGCAAGAGCCAGCGCAGACGGAGCAAAGCCCAAAACGGGCTGTCCCAAAGAGAACTGGCACGGgtgtatgcGGAAGACCTCTAGGGGAGCAGTGAGGAGCCAGAGACGCAGGAGATCGAAGTCCCCTATCCTGCACCCCCCCAAATTCACCTACTGCAGCTCCAAGCTGTCCCCGCCGCCCGGCCATCTGAAACACAAGAGCCAGCTCGAGCCGCAGGAGGACGGGGTGGCGCTGGGGGTCCCTGCCAAGAAGGAGCTGCTGTCATCAGTGCATTCCCCCTCCTCTCCCGTGTTCGGGGTGGCCAGTTACGAACCCTACGGCCACGAGTGTCGCGGGGGGGGCGTGGCTCCGGAGCCCAAACTCAAGCCTGTGTCCGATGAGGACAGCGAGTCCGACACCCCTGTTGCAGAGAGGAATCCTGGCGCTGCGGCTAAGCCAGAGCAAGCAGCCAGCAGCAGCGATGGGGCTGTAGGGGGCATTGCTGGTGCCTCCTCCTCTGACTTCCAGTCACTGTCCAGGCTGCACCAGGACGGGGAGGGGTCATGCCCGTGCCCTGGGGGGCAGTGCCAGTGTCGCGGCTGGCAGGGCGTGGAGGTTTACTCCTTCACTGGCCTGCGGGACGTCATCTCCGAGTGCGAGAGGAACATGGCAGGTGCGGAGGATGGCCACGCCTCGCCCCACCGCCGCACGCAGAGCAGCTCCTCGGGCTCCCCGCGCTCCTGCTCCGAACAGGCCCGTGCGTACGTAGATGACATCACTATTGAGGACCTGTCGGGATACATGGAGTACTACCTGTACATCCCCAAGAAGATGTCACACATGGCTGAGATGATGTACACTTAACTGGGCCGCAGGGGATGCTCACGCTCTCGAATGGTTAGGCATGATGTCATGGCAAACGAGGAACCCTGCGCAGGTTGAGCGGTTTCCAGTTTTCAGCAGCTTTTCTCAGTCTCCtttttttgttccttgtttgtttttattttatgagctCATTCTGTTTAATACTGGTTTACATGATAAGTTGCCAAAGCGCGCTCTCAATATGTGCAGGTTTGATTTACTGGATGTGCAAACTTGTAAAGCCaagttaaaatagtttttccaATGCCAAGCATGTCATGTGTCTTGGGAGTCTTCATTTCACTGTGTTAATTAAACTTGTTGAAATTGTTTATGCATTACAGTATAACTCGTCTTTCTCTGGCATTCTATTGGtctgattttaataaatgacaGAGTTCCAAGCCTGAAAATAGGAATTGGGGAACTGGATATTTTGGTGAATAAATTGCTTGACATGTACGAGCTGCGGTTTCCACTTGCTCACATCCTTCTTTTGTGTCCTTAGATTGTGTCCTTAACGAATGAGTTTCTGAGGTGGATTCATTACTgaatttagtgttttttttccccctcagattttttgtttgttttttaattcagattgccaatgaaaataataaccgTTATGACAAAATGCTTTCTGCTGTCTTAATTATTGTGTGAATGTCAGCTATTTTGTGACAAACTGGGGGTTCCTTTGTGAACGGAATCTGAATAAAAACAGTCTTTCTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34168 lncRNA downstream 18907 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 144698 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 220724 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 228074 36760345 ~ 36760589 (-) True G27252
TU34097 lncRNA downstream 242797 36744068 ~ 36745866 (-) True G27243
TU34205 lncRNA upstream 99675 37092649 ~ 37093300 (-) True G27335
TU34322 lncRNA upstream 573795 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 574229 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 577285 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 784095 37777069 ~ 37777318 (-) True G27463
AMCG00007910 mRNA downstream 46795 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007911 mRNA downstream 87993 36885380 ~ 36900670 (-) True AMCG00007911
AMCG00007908 mRNA downstream 108983 36870131 ~ 36879680 (-) True AMCG00007908
AMCG00007907 mRNA downstream 142080 36842475 ~ 36846583 (-) True AMCG00007907
AMCG00007901 mRNA downstream 245194 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007916 mRNA upstream 20330 37013304 ~ 37023811 (-) True AMCG00007916
AMCG00007920 mRNA upstream 145253 37138227 ~ 37141287 (-) True AMCG00007920
AMCG00007926 mRNA upstream 224796 37217770 ~ 37238928 (-) True AMCG00007926
AMCG00007929 mRNA upstream 247110 37240084 ~ 37242946 (-) True AMCG00007929
AMCG00007928 mRNA upstream 255405 37248379 ~ 37259255 (-) True AMCG00007928
TU33771 other downstream 2118856 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11357071 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11723712 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12720742 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 13015998 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 247115 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 501937 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 574643 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 577983 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 580060 37573034 ~ 37588525 (-) True G27442

Expression Profile