RNA id: AMCG00007918



Basic Information


Item Value
RNA id AMCG00007918
length 915
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00007918
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37085100 ~ 37086014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCACCAGCCTACCTTGCCAAATTCTCTGTCATTCTGATCACCTATGTAGCAACCAACTTCCTCAACGGGTTGCTGGTATTCACCTACTTTAAGCATCCTCTATTCCATGAGAACTCGCGTTATGTCCTGTTTGTTCACCTGGTAATTAACGATGTTCTGGAGTTGAGCGTTGCCTTGACAATAATCTTTTGGATGATGTTGGTACCTTCTATTATGGTCCCCATCTGctatacattcatatttgttgCATCCACCACCACGCTGAACACACCCCTGAACCTGGCTGTGATGTGCCTGGAGAGGTACGTTGCTATCTGCTTCCCTCTGCGCCACTCGCAGATCTGCAGCCTGCGCAGGACCTACATGGCAATCGCTGTCGTCTGGCTCATCGGCATGATTCCCATTGCCACAGAGTTCATCATAGCTTTGCCATCTGAGCCAGCAGGTTACATCCACTCGTTCATTGACTGCAACCGTCAGAATGTAGTGCACTCTACCTACCAGGCTGATATCAGATCGTCCTTCCGGGCATCATATTTAGTGTTTGTGTGGCTGGTCATAGTGTCCACGTATCTGCGGATCACCATCGCCGCCTGGTCTGCCAGCTCCTCGGAGAAGAACTCTGCTAAGAAAGCACGCAACACCATCCTGCTCCAcgccctgcagctgctgctcgCCATGCTGACCTTCATCACACCCTTAACTGACCAGTTGTTAATGACTCTACCTCGGCAGATGATCCAGGACGTGTATTTTGCCAGATACTACCTGGTGTACATCATCCCCAGAGTGTTGAGTCCAGTGATCTACGGACTGAGAGACGGGAACTTCAGGAAGCACCTGAGGGGGCACATGGCTTGTTTTCAGAAGCAGGTTGTACCCACTCTCCTGTGTGACACTCGTACTCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34164 lncRNA upstream 128646 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 239576 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 317161 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 357983 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 655169 36429406 ~ 36429931 (+) True G27187
TU34204 lncRNA downstream 6635 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 117856 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 409145 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 691051 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 930854 38016868 ~ 38017144 (+) True G27489
AMCG00007913 mRNA upstream 13667 37056836 ~ 37071433 (+) True AMCG00007913
AMCG00007917 mRNA upstream 32903 37040482 ~ 37052197 (+) True AMCG00007917
AMCG00007914 mRNA upstream 50311 37023412 ~ 37034789 (+) True AMCG00007914
AMCG00007909 mRNA upstream 115365 36956659 ~ 36969735 (+) True AMCG00007909
AMCG00007912 mRNA upstream 145502 36929053 ~ 36939598 (+) True AMCG00007912
AMCG00007921 mRNA downstream 11912 37097926 ~ 37098855 (+) True AMCG00007921
AMCG00007919 mRNA downstream 27617 37113631 ~ 37117196 (+) True AMCG00007919
AMCG00007922 mRNA downstream 49653 37135667 ~ 37136216 (+) True AMCG00007922
AMCG00007930 mRNA downstream 82852 37168866 ~ 37171102 (+) True AMCG00007930
AMCG00007925 mRNA downstream 105968 37191982 ~ 37199824 (+) True AMCG00007925
TU33841 other upstream 1464299 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7310065 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8081327 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8630393 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8990359 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1058970 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1082556 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1269915 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1346031 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1606725 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile