RNA id: AMCG00007919


Basic Information

Item Value
RNA id AMCG00007919
length 1467
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00007919
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37113631 ~ 37117196 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTCTTTGGGCAACTCCTCTGGACAGCAGGACACATTGCAGTACCACATGTCCATGTCACCACAAGGTATCGCCCATTCTCTTGTCATTCTGATAACCTATGTAGCAATGACCATCATCAACGGGTTGCTGGTTTTCACCTGCTTTAAGCATCCTCTTTTCTATGAGAACTCACGCTACATCCTGTTTGTTCACCTGGCGATTAATGATTTTCTGGAGTTGAGTTTTTCCCTGACTATGTTCTTGTGGGTTAAGATACAGCTCTTCGTGTTGATCCCAGTCTGCTATTACTTTACATTTGTTGCGTCCACCACCACAACGAACACGCCCCTGAACCTGGCTGTGATGTGCCTGGAGAGGTATGTTGCTATCTGCTTCCCTCTGCGCCACTCGCAGATCTGCAACCTGCCCAGGACCTACATGGCAATCACTGTCATCTGGCTCCTTGGCATGATTCCCATTGCCACAGAGTTTATTGTATCTCTCCGATTACAGCCAGCAGGCTTCTTCCGCTCTATAGTTCTCTGTGACCGTCAGAATACAATACGCACTGCCTACCAGGCTGATATCAGATCATCCTTCCGGTCATCATATTTAGTGTTTGTGTGGCTGGTCATAGTGTCCACGTATCTGCGGATCGCCATCGCCGCCCGGTCTGCCAGCTCCTCGGAGAAGAACTCTGCTAAGAAAGCACGCAACACCATCCTGCTCCAcgccctgcagctgctgctcatGATGATGACCTTTGCTGCCTCCTTAACTGACCAGTTGTTAATGACTCTACCTAGTCAGATGATCCAGGACGTATATTTTGTCAGATACTACCTGGTGTACATCATCCCCAGAGTAGAACCAGCGATGAACGCATCTGCAGCTCAGGTCCGGACCCAGGAAGTCTTCCACATCGCCTTTTTGAAGAACTTCACTGTGGTCCTCCTGGGCATTGTCATCAACTGCATCAATGGAGGGCTGGTCTTCTGCTTCTTCAGCACCCAGATGTTCTACAACAACCCACGCTACATCTTGTACATCCACACAGTGATCAACGACATGATATATCTCTCTGCTGCCATCAGTTTGCACGTCCTGACCTACATCTTCCCGGTCATGAACGTTTCTGTCTGCACTGTGCTTGTTATCATTGCCTTTTTACTCTCAATCAACAACCCCCTGAACCTGGCGGGCATGGCCGTGGAGCGCTACATCGCCATCTGTGAACCGCTGCGGCACTCCCAGATCTGCACAGTGCGCCGCACCTACACCCTCATCGCCCTCATCTGGTGTGTGGGGGCCGTCCCAGGGCTGTCTGACTTGGTCATCGTGTTGGTGACCAGACCCCTGAGTTTCTTCtcatcaaatattttttgttacagctataatgtttttaattctccCTATCAGGAACTAAAAACTGGGGCCACTCATGTTGTGTACATGGTTTGCGTGTGGCTGACTCTGATGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34204 lncRNA upstream 20301 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 157177 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 268107 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 345692 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 386514 36685310 ~ 36727117 (+) True G27216
TU34216 lncRNA downstream 86674 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 377963 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 659869 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 899672 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 910184 38027380 ~ 38027923 (+) True G27497
AMCG00007921 mRNA upstream 14776 37097926 ~ 37098855 (+) True AMCG00007921
AMCG00007918 mRNA upstream 27617 37085100 ~ 37086014 (+) True AMCG00007918
AMCG00007913 mRNA upstream 42198 37056836 ~ 37071433 (+) True AMCG00007913
AMCG00007917 mRNA upstream 61434 37040482 ~ 37052197 (+) True AMCG00007917
AMCG00007914 mRNA upstream 78842 37023412 ~ 37034789 (+) True AMCG00007914
AMCG00007922 mRNA downstream 18471 37135667 ~ 37136216 (+) True AMCG00007922
AMCG00007930 mRNA downstream 51670 37168866 ~ 37171102 (+) True AMCG00007930
AMCG00007925 mRNA downstream 74786 37191982 ~ 37199824 (+) True AMCG00007925
AMCG00007923 mRNA downstream 87551 37204747 ~ 37216558 (+) True AMCG00007923
AMCG00007924 mRNA downstream 127071 37244267 ~ 37246807 (+) True AMCG00007924
TU33841 other upstream 1492830 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7338596 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8109858 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8658924 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9018890 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1027788 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1051374 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1238733 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1314849 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1575543 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile